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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTAACTCTGACATCTCGTATCAGGAACACCAACTCTGATGGAAAGCCGTTTACATTCACATTTGCTTATCACACCTATTTCTCTGTCTCAGACATCAGgttaaatctcattgcatacatttatttacttctttttcaagaagatttggaatacaaacaaagattatgtaataagcattagtttttcttgtgttcag

Basic information

species Arabidopsis thaliana
transcript AT5G57330.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G57330.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os08g14330.1 (Oryza sativa), 5'ss of exon 5
AATTAACTCTGACATCTCGTATCAGGAACACCAACTCTGATGGAAAGCCGTTTACATTCACATTTGCTTATCACACCTATTTCTCTGTCTCAGACATCAGgt-taaatctcat--tgcatacatttatttacttctttttcaagaagatttggaatacaaacaaagattatgtaataagcatta--gtttttcttgtgttcag
| || | ||| || ||||| || ||||| |||||| |||||||||   | ||  | | ||||||||| |||||||| || ||||||||||| |||||||||| |   | ||||  ||  |    || |  ||||  ||||      | ||||   |    |   |  |  |  |||      ||  ||  ||  |||| |   
ATTTGAGTCTCACTTCTCGAATTAGGAATACCAACACTGATGGAAGATCTTTCTCTTACACATTTGCATATCACACATACTTCTCTGTCTCTGACATCAGgtatgtgtttcatgatgttttatcttctccactttatttttgtagtgttttgacctctgtaatgatctgttccaattgttgatatagtacttgatgtgct---

upper sequence: AT5G57330.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA17G06880.1 (Glycine max), 5'ss of exon 5
AATTAACTCTGACATCTCGTATCAGGAACACCAACTCTGATGGAAAGCCGTTTACATTCACATTTGCTTATCACACCTATTTCTCTGTCTCAGACATCAGgttaaatctc---attgcatacatttatttacttctttttcaa---gaagatttggaatacaaacaaagattatgtaataagcattagtttttcttgtgttcag
|  |     |||||||||| ||||||||||| |||  |||||| ||||| ||| ||||||||||||||||||| || ||||||||||| ||||| || |||  |   ||    | |  | |||| | ||   |     |||||   |||  |||    ||      | |  | | |  ||   |||   |||  ||   ||   
ATCTGTTGATGACATCTCGGATCAGGAACACTAACATTGATGGGAAGCCATTTTCATTCACATTTGCTTATCATACATATTTCTCTGTGTCAGATATAAGgcaagtgcttgaaagttgaaacatgtcttatatcacacttcaatttgaaattttttgttattgcgcatgtctttatt-tataaattgactttgtttaactt---

upper sequence: AT5G57330.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA13G00780.1 (Glycine max), 5'ss of exon 5
AATTAACTCTGACATCTCGTATCAGGAACACCAACTCTGATGGAAAGCCGTTTACATTCACATTTGCTTATCACACCTATTTCTCTGTCTCAGACATCAGgttaaatctc---attgcatacatttatttacttc-tttttcaagaagatttggaatacaaacaaagattatgtaataagcattagtttttcttgtgttcag
|  | |   |||||||||| ||||||||||| |||  |||||| ||||| ||| |||||||||||||| |||| || ||||||||||| ||||| || |||  |   ||    | |  | ||||  ||||| |||    ||||| | ||  |    || || || | ||    | ||    || | |   |||  ||   | 
ATCTGATGATGACATCTCGGATCAGGAACACTAACATTGATGGGAAGCCATTTTCATTCACATTTGCTAATCATACATATTTCTCTGTGTCAGATATAAGgcaagtgcttgaaagttgaaacatg-atttatttcacacttcaatatgaaattttctataatcatacatgtctttatttatat-attgactctgttgccaaa

upper sequence: AT5G57330.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA15G17630.1 (Glycine max), 5'ss of exon 5
AATTAACTCTGACATCTCGTATCAGGAACACCAACTCTGATGGAAAGCCGTTTACATTCACATTTGCTTATCACACCTATTTCTCTGTCTCAGACATCAGgttaaatctcattgcatacatttat------ttacttctttttcaagaagatttggaatacaaacaaagattatgtaataagcattagtttttcttgtgttcag-
|  | |  ||||||||||| ||||||||||| |||  ||| |||||||| ||| | ||||| ||||| ||||| || ||||||||||| ||||| || ||||||   ||      ||   | | |      |||   | ||||   || ||||| |  |          |||   ||||   || |  |    |   || | |  
ATCTGATGCTGACATCTCGGATCAGGAACACAAACAGTGAGGGAAAGCCATTTTCGTTCACCTTTGCATATCATACGTATTTCTCTGTATCAGATATAAGgttagtgcttgaaatatgtttctctcacactttatcgcattttagtgatgattttgtgtttttt-----atttattaatttacactgttgccacaattgcttaaa

upper sequence: AT5G57330.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA09G06380.1 (Glycine max), 5'ss of exon 5
AATTAACTCTGACATCTCGTATCAGGAACACCAACTCTGATGGAAAGCCGTTTACATTCACATTTGCTTATCACACCTATTTCTCTGTCTCAGACATCAGgttaaatctcattgcatacatttatttacttctttttcaagaagatttggaatacaaacaaagattatgtaataagcattagtttttcttgtgttcag------
|  | |  |||||||| || ||||||||||| |||  ||| || ||||| ||| | ||||| ||||| ||||| || ||||||||||| |||||||| ||||||   ||      |||  ||| |||    |||| ||  | |  || | |||           ||   | |||| |      | || |    || |       
ATCTGATGCTGACATCCCGGATCAGGAACACAAACAGTGAGGGGAAGCCATTTTCGTTCACCTTTGCATATCATACATATTTCTCTGTATCAGACATAAGgttagtgcttg--aaatatgtttgtttcacactttatc--gtattttagtaatgattttctgtttttatttataaactaacactgttgtcacatttaacaactt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125073596|gb|EL137868.1|EL137868
EST:     CACCTATTTCTCTGTCTCAGACATCAG                         TGAAGTACGGGTTGAAGGATTGGAAACGTTGGATTATCTTGACAACTTGAA
genomic: CACCTATTTCTCTGTCTCAGACATCAGgttaaatctc ... ttgtgttcagTGAAGTACGGGTTGAAGGATTGGAAACGTTGGATTATCTTGACAACTTGAA
EST: gi|164183397|gb|ES021023.1|ES021023
EST:     TTACATTCACATTTGCTTAATCACACCTATTTCTCTGTCTCAGACATCAG                         TGAAGTACGGGTTGAAGGATTGGAAACGTTGGATTATCTTGACAAC
genomic: TTACATTCACATTTGCTT-ATCACACCTATTTCTCTGTCTCAGACATCAGgttaaatctc ... ttgtgttcagTGAAGTACGGGTTGAAGGATTGGAAACGTTGGATTATCTTGACAAC