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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatttgacttttcaacaccattggtaatgtgaagaaaaaagagagttgcaaagtcattgttctgttttgaaggaagtctcattctcttattgtctttgtatggatgaaagTGAGATCTATGGAAGGGAGTTAGTTGACCTGCGGAACCAGAGTCGATGGGAGTTTCTCAATACATTTTTTTCAGTTTCAGAGGCTCTGGCTTATGCACAG

Basic information

species Arabidopsis thaliana
transcript AT5G48960.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G48960.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA17G04580.1 (Glycine max), 3'ss of exon 5
gtatatttgacttttcaacaccattggtaatgtgaagaaaaaagagagttgcaaagtcatt-gttctgttttgaaggaa--gtctcatt--ctcttattgtctttgtatg-gatgaaagTGAGATCTATGGAAGGGAGTTAGTTGACCTGCGGAACCAGAGTCGATGGGAGTTTCTCAATACATTTTTTTCAGTTTCAGAGGCTCTGGCTTATGCACAG
                  ||    || | |     |  || |    ||| |  | |||||| ||       || || ||  || ||  |    | | ||   ||||||||  ||| ||||||||| ||||| || ||  | || |||||||| ||  |||||||||||||||||||||||||| | ||||| || || || ||| |||| ||    |||
-----------------gcatgcatgctcacacacattaatagcttagtag--atgtcatttgtcaaaaactggagtaatagtttctgtagtgccttttaattttgtatgcaatggaagTGAGATGTATGGGAGAGAACTGGTGGACCTGCGAAAGGAGAGTCGATGGGAGTTTCTCAATACACTGTTTTCTGTGTCTGAAGCTGTGGCCTACATGCAG

upper sequence: AT5G48960.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA15G21240.1 (Glycine max), 3'ss of exon 4
gtatatttgacttttcaacaccattggtaatgtgaagaaaaaagagagttgcaaagtcattgttctgttttgaaggaagtctcattctcttattgtctttgtatggatgaaagTGAGATCTATGGAAGGGAGTTAGTTGACCTGCGGAACCAGAGTCGATGGGAGTTTCTCAATACATTTTTTTCAGTTTCAGAGGCTCTGGCTTATGCACAG
        |||| |  ||    ||| ||  | || |     ||   | ||  | | |  |   | ||   |  |     | |||     |   |   ||| | || ||| ||||||||||||||| || ||  | || ||||||||| |  |||||||||||||||||||||| ||||| || || || || || ||| |||||||    |||
-------agactatataagctgattagtgct-tgtattttgaaatcaattaaataatattcagtttgcccttta-----tttcaagtgttacctaattttatgtgcatggaagTGAGATCTATGGGAGAGAACTGGTGGACCTGCGGCAAAAGAGTCGATGGGAGTTTCTCAACACATTCTTCTCTGTGTCCGAAGCTGTGGCTTACATGCAG

upper sequence: AT5G48960.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA13G17950.1 (Glycine max), 3'ss of exon 5
gtatatttgacttttcaacaccattggtaatgtgaagaaaaaagagagttgcaaagtcattgttctgttttgaaggaagtctcattctcttattgtctttgtatggatgaaagTGAGATCTATGGAAGGGAGTTAGTTGACCTGCGGAACCAGAGTCGATGGGAGTTTCTCAATACATTTTTTTCAGTTTCAGAGGCTCTGGCTTATGCACAG
     | ||  | ||||    ||||  ||   |     |         | | |||  |   ||  |  |||    | |||   | |   | ||| | | || |   ||| ||||||||| ||||| || ||  | || |||||||| ||  |||||||||||||||||||||||||| | ||||| || || || ||| |||| ||    |||
----gtgtgcatgttcacacacattattagcttagtagatgtcatttatcg-aaaaccggagtaataatttct--gtagtgctact---taattttatatgca---atggaagTGAGATGTATGGGAGAGAACTGGTGGACCTGCGAAAGGAGAGTCGATGGGAGTTTCTCAATACACTGTTTTCTGTGTCTGAAGCTGTGGCCTACATGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgttctgttttgaaggaagtctcattctcttattgtctttgtatggatgaaagTGAGATCTATGGAAGGGAGTTAGTTGACCTGCGGAACCAGAGTCGATGGGAGTTTCTCAATACATTTTTTTCAGTTTCAGAGGCTCTGGCTTATGCACAG
         ttttgaa  TA-rich tract