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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGGCTTCCTCTCACGCGCGGGTTTGTGGGATAAAAGCCACTTGATGAGACAAATCGAAAAgtatttatgcctcttctctgcatttccgagtaactcataagctcaaaccaagctcacatttaaactacacttactttcttcaaaattggtttcag

Basic information

species Arabidopsis thaliana
transcript AT5G48960.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G48960.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GLYMA17G04580.1 (Glycine max), 5'ss of exon 15
GTGGGGCTTCCTCTCACGCGCGGGTTTGTGGGATAAAAGCCACTTGATGAGACAAATCGAAAAgtatttatgcctcttctctgcatttccgagtaactcataagctcaaaccaagctcac-atttaaactacacttactttcttcaaaat-tggtttcag
|||||| || || || || || ||  ||||||||||||||||||||||||||||||| || |||||| |     | |  |    | ||     | || | | | ||| |    | | ||  | |      | ||| |  |  || ||  | |  || |||
GTGGGGTTTTCTATCTCGTGCTGGGCTGTGGGATAAAAGCCACTTGATGAGACAAATTGAGAAgtatgtgg---tttagtggttacttattgatgaccc-tgatctctattttatcacattactcttttgatactgaactgtttaaatttattattgcag

upper sequence: AT5G48960.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GLYMA15G21240.1 (Glycine max), 5'ss of exon 14
GTGGGGCTTCCTCTCACGCGCGGGTTTGTGGGATAAAAGCCACTTGATGAGACAAATCGAAAAgtatttatgcctcttctctgcatttccgagtaactcataagctcaaaccaagctcacatttaaactacacttactttcttcaaaattggtttcag
||||||||  || || || || ||||||||||||||||||||||||||| ||||||| || |||||| | |   ||||||   ||   | ||       || |   || ||   || |    || ||    |  |  ||   |  |  |   ||  ||
GTGGGGCTATCTATCGCGTGCTGGTTTGTGGGATAAAAGCCACTTGATGCGACAAATTGAGAAgtatgt-tatttcttctagacacccctgatc--tctattataccagactttgcactttcttgaaaatgaactgtttaaatttatttcaattgtag

upper sequence: AT5G48960.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GLYMA13G17950.1 (Glycine max), 5'ss of exon 15
GTGGGGCTTCCTCTCACGCGCGGGTTTGTGGGATAAAAGCCACTTGATGAGACAAATCGAAAAgtatttatgcctcttctctgcatttccgagtaactcataagctcaaaccaagctcacatttaaactacacttactttcttcaaaattggtttcag
|||||| || || || || || ||  ||||||||||||||||||||||||||||||| || |||||| |      ||| | |      | ||        | | | ||   |    |     || ||||    | | |||  | |     |       
GTGGGGTTTTCTATCTCGTGCTGGACTGTGGGATAAAAGCCACTTGATGAGACAAATTGAGAAgtatgtgc-ttacttttttatgaccctgatctctattttatcacattactcttttgatattgaactgt-ttaaattttattattgcag-------

upper sequence: AT5G48960.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: Vv05s0020g00880.t01 (Vitis vinifera), 5'ss of exon 15
GTGGGGCTTCCTCTCACGCGCGGGTTTGTGGGATAAAAGCCACTTGATGAGACAAATCGAAAAgtatttatgcctcttc---tctgcatttccgagtaact-cataagctcaaaccaagctcacatttaaa-----ctacacttactt--tcttcaaaattggtttcag------
||||||||| || ||||| |||||| | ||||||||||| ||||||||||||||||| ||||||||| |     || |    | ||| ||      |   |   || |   ||   ||  ||| |    ||     ||||  |||  |  || | | |||   || ||       
GTGGGGCTTTCTTTCACGTGCGGGTCTTTGGGATAAAAGTCACTTGATGAGACAAATTGAAAAgtatgtgcttttccttcattatgccttctttttttcttatgtaggagtaactaaacttcataaactaagggttctacctttatatgatccttacaatatcttccaattgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163969400|gb|ES130026.1|ES130026
EST:     TCACGCGCGGGTTTGTGGGATAAAAGCCACTTGATGAGACAAATCGAAAA                         GTATGCGGATATATACACATCA
genomic: TCACGCGCGGGTTTGTGGGATAAAAGCCACTTGATGAGACAAATCGAAAAgtatttatgc ... ttggtttcagGTATGCGGATATATACACATCA