Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTCCTCGGGGTATATTTTGTAGTCGTACATTGAATCTTCGGTCCATTAGTGCAATTGGATATGATATGGATTACACTTTGATGCACTACAATGTCATGgtgagttcttcctttctcagacataagtaggaaacatttatgcacccatatttgatgctaatttatggtcttgttcag

Basic information

species Arabidopsis thaliana
transcript AT5G48960.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G48960.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os01g14810.2 (Oryza sativa), 5'ss of exon 3
CTCTCCTCGGGGTATATTTTGTAGTCGTACATTGAATCTTCGGTCCATTAGTGCAATTGGATATGATATGGATTACACTTTGATGCACTACAATGTCATGgtg----agttcttcctttctcagacataagtaggaaacatt------tatgcacccatatttg-atgctaatttatggtcttgttcag------------
||||||||| || |||||||| |   | ||| | |||||||| ||||| ||||  ||||| ||||||||||| || || ||||| ||||||||||| |||||     | |   |   |  ||| |  |   || ||| ||||      ||       | || || |    | ||||     ||||| |             
CTCTCCTCGTGGAATATTTTGCACCAGGACACTAAATCTTCGATCCATCAGTGTCATTGGCTATGATATGGACTATACATTGATTCACTACAATGTGATGgtacttcaatatctatatcatcaaat-tgtctacgaatcattctaaagtagatgattacatatgtacaaaattttacatatttgttgaactgatatgacat

upper sequence: AT5G48960.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA13G17950.1 (Glycine max), 5'ss of exon 3
CTCTCCTCGGGGTATATTTTGTAGTCGTACATTGAATCTTCGGTCCATTAGTGCAATTGGATATGATATGGATTACACTTTGATGCACTACAATGTCATGgtgagttcttcctttctcagacata-agtaggaaacatttatgcacccatatttgatgctaatttatggtcttgttcag---------------------
 || ||||| || ||||| || || |||||||||||| | |||||||||||||| ||||||||||| ||||| || || ||||| || || ||||| |||||  | |  |  |   |    |||| |||  | |  |  |||  |  |||     ||||   |  ||  | || ||                        
TTCGCCTCGTGGAATATTCTGCAGCCGTACATTGAATTTGCGGTCCATTAGTGCCATTGGATATGACATGGACTATACCTTGATCCATTATAATGTGATGgtacgcttctgttccatgtatcatatagtctgtatgaactatataatcattaagcatgcagctaaataattttttttgcggtagaccacctttttatgtt

upper sequence: AT5G48960.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA17G04580.1 (Glycine max), 5'ss of exon 3
CTCTCCTCGGGGTATATTTTGTAGTCGTACATTGAATCTTCGGTCCATTAGTGCAATTGGATATGATATGGATTACACTTTGATGCACTACAATGTCATGgtgagttcttcctttctcagacataa-----gtaggaaacatttatgcacccat-atttgatgctaatttatggtct----tgttcag------------
 || ||||| || ||||| || || |||||||||||| | |||||||||||||| ||||||||||| ||||| || || ||||| || || ||||| |||||    |  |  |   |    ||||      ||| |||  ||     | |  || | ||    |  |  |||    |    ||||||             
TTCGCCTCGTGGAATATTCTGCAGCCGTACATTGAATTTGCGGTCCATTAGTGCCATTGGATATGACATGGACTATACCTTGATCCATTATAATGTGATGgtacacttctgttccatgtaccatatagtctgtatgaactataataactctaatcacttagcacacaactataacttcctttgttcaattttcaattgtg

upper sequence: AT5G48960.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv05s0020g00880.t01 (Vitis vinifera), 5'ss of exon 3
CTCTCCTCGGGGTATATTTTGTAGTCGTACATTGAATCTTCGGTCCATTAGTGCAATTGGATATGATATGGATTACACTTTGATGCACTACAATGTCATGgtgagttcttcctttctcagacataagtaggaaacatttatgcacccatatttgatgctaatttatggtcttgttcag--------------------------
 || || || || ||||||||||| |||||||||||||||||||| || ||||| ||||||||||| ||||| ||||| ||||||||||| ||||| ||||| |  ||  | | | |  |   || ||    |     | || |    | |||   | ||| | |    |    | |                           
TTCACCACGTGGCATATTTTGTAGCCGTACATTGAATCTTCGGTCAATCAGTGCCATTGGATATGACATGGACTACACCTTGATGCACTATAATGTGATGgtaacgtcaacttgtttttgtattatgttaagaggggctttgga----tttttagagataactcaaacccaaactaaaaagtatacaatatttagcaaacatca