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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgttatctaatccttacaactttgtgttatgtatttgaagtttgagtatccctttgttgcgaaaacatgaatgtattgagttatttgtgtctggttttatatggacttttctttttcttttgtgtcacattctcatgcctggtattgcagGGCCCTTTCTCTGCACAGCACTCTCCTCGGGGTATATTTTGTAGTCGTACATTGAATCTTCGGTCCATTAGTGCAATTGGATATGATATGGATTACACTT

Basic information

species Arabidopsis thaliana
transcript AT5G48960.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G48960.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA13G17950.1 (Glycine max), 3'ss of exon 2
gttcgttatctaatccttacaactttgtgttatgtatttgaagtttgagtatccctttgttgcgaaaacatgaatgtattgagttatttgtgtctggttttatatggacttttctttttcttttgtgtcacattct-catgcctggtattgcagGGCCCTTTCTCTGCACAGCACTCTCCTCGGGGTATATTTTGTAGTCGTACATTGAATCTTCGGTCCATTAGTGCAATTGGATATGATATGGATTACACTT
                                      || |||     ||  ||||| | | |      |   ||| | ||    ||  || ||||    | || || |  | || |     |   |  || | |   ||  |  |  || || ||||||  ||  |     | || ||||| || ||||| || || |||||||||||| | |||||||||||||| ||||||||||| ||||| || || |
-------------------------------------gtgcagtagacctactccttt-tcgtg------ttcttgtgtagaacccttcttgactggg---aaatagattcatgttctgtaagtaaatatcactttgtttgtgtttttgtgtagAGCCCTTCTTCATCCAGAAATTCGCCTCGTGGAATATTCTGCAGCCGTACATTGAATTTGCGGTCCATTAGTGCCATTGGATATGACATGGACTATACCT

upper sequence: AT5G48960.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA17G04580.1 (Glycine max), 3'ss of exon 2
gttcgttatctaatccttacaactttgtgttatgtatttgaagtttgagtatccctttgttgcgaaaacatgaatgtattgagttatttgtgtctggttttatatggacttttctttttcttttgtgtcacattct-catgcctggtattgcagGGCCCTTTCTCTGCACAGCACTCTCCTCGGGGTATATTTTGTAGTCGTACATTGAATCTTCGGTCCATTAGTGCAATTGGATATGATATGGATTACACTT
                                      || |||     |   ||||| ||| |      |   ||| | |||  |||  || ||||    |  | || |  | || |     |   |  || | |   ||  |  |  || || ||||||  ||  |     | || ||||| || ||||| || || |||||||||||| | |||||||||||||| ||||||||||| ||||| || || |
-------------------------------------gtgcagtagacctgctccttt-ttgtg------ttcttgtgtagagccattcttggctggg---aagttgattcatgttctataagtaaatatcactttgtttgtgtttttgtgtagAGCCCTTCTTCATCGAGAAATTCGCCTCGTGGAATATTCTGCAGCCGTACATTGAATTTGCGGTCCATTAGTGCCATTGGATATGACATGGACTATACCT

upper sequence: AT5G48960.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv05s0020g00880.t01 (Vitis vinifera), 3'ss of exon 2
gttcgttatctaatccttacaactttgtgttatgtatttgaagtttgagtatccctttgttgcgaaaacatgaatgtattgagttatttgtgtctggttttatatggacttttctttttcttttgtgtcacattctcatgcctggtattgcagGGCCCTTTCTCTGCACAGCACTCTCCTCGGGGTATATTTTGTAGTCGTACATTGAATCTTCGGTCCATTAGTGCAATTGGATATGATATGGATTACACTT
                                       | | || ||| |   |  |     |  |||| |    |   |||||||      ||  || |  ||      ||  ||| | |   | |||||   |  |  ||| ||| |||||| ||||| ||  ||    | || || || || ||||||||||| |||||||||||||||||||| || ||||| ||||||||||| ||||| ||||| |
---------------------------------------ggacttggagcacaaccattcaatggtaacaggggc-tgcagagttat------cttattgtgcataa----ttgctttccatcaatctcacagcatttt--ctgatat-gcagGGTCCTTTTTCATCAAGATATTCACCACGTGGCATATTTTGTAGCCGTACATTGAATCTTCGGTCAATCAGTGCCATTGGATATGACATGGACTACACCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatatggacttttctttttcttttgtgtcacattctcatgcctggtattgcagGGCCCTTTCTCTGCACAGCACTCTCCTCGGGGTATATTTTGTAGTCGTACATTGAATCTTCGGTCCATTAGTGCAATTGGATATGATATGGATTACACTT
           ttttctttttctttt  TA-rich tract