1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ACACACATTCACATAATCCCGCGTAAGGAACGTGACTGCTTATGGGCTTCCGAGgtacaaaacaagatcaaaactatacattttgaaaggtttatgaaagttgcctgatgtgatagtcttttgttttgtttgtgatgacag
species | Arabidopsis thaliana |
transcript | AT5G48545.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ACATTCACATAATCCCGCGTAAGGAACGTGACTGCTTATGGGCTTCCGAG AGCTTACGGAGAEST: gi|125245444|gb|EL259529.1|EL259529
genomic: ACATTCACATAATCCCGCGTAAGGAACGTGACTGCTTATGGGCTTCCGAGgtacaaaaca ... gtgatgacagAGCTTACGGAGA
EST: CCGCGTAAGGAACGTGACTGCTTATGGGCTTCCGAG AGCTTACGGAGACACTCTCTGAAACTTGACAAGGAAGCATCTCAACTGGTAEST: gi|124914949|gb|EH988823.1|EH988823
genomic: CCGCGTAAGGAACGTGACTGCTTATGGGCTTCCGAGgtacaaaaca ... gtgatgacagAGCTTACGGAGACACTCTCTGAAACTTGACAAGGAAGCATCTCAACTGGTA
EST: ACATTCACATAATCCCGCGTAAGGAACGTGACTGCTTATGGGCTTCCGAG AGCTTACGGAGACACTCTCTGAAACTTGACAAGGAAEST: gi|125051117|gb|EL123386.1|EL123386
genomic: ACATTCACATAATCCCGCGTAAGGAACGTGACTGCTTATGGGCTTCCGAGgtacaaaaca ... gtgatgacagAGCTTACGGAGACACTCTCTGAAACTTGACAAGGAA
EST: TTATGGGCTTCCGAG AGCTTACGGAGACACTCTCTGAAACTTGACAAGGAAGCATCTCAACTGGTA
genomic: TTATGGGCTTCCGAGgtacaaaaca ... gtgatgacagAGCTTACGGAGACACTCTCTGAAACTTGACAAGGAAGCATCTCAACTGGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACACACATTCACATAATCCCGCGTAAGGAACGTGACTGCTTATGGGCTTCCGAGgtacaaaacaagatcaaaactatacattttgaaaggtttatgaaagttgcctgatgtgatagtcttttgttttgtttgtgatgacag
- - - - - - - - - - - - AAGGAA