1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ACTCATTTAACTTATTGGTTAACAACGGCGCAGCAGCTGGACAAGTCATATTTCACgttagcacatactgacttccccaactttccatttctcttatttcttgacgaaggaagtttctactaacagttccttttttgtttgcatttcag
species | Arabidopsis thaliana |
transcript | AT5G48545.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CAAGTCATATTTCAC ACACACATTCACATAATCCCGCGTAAGGAACGTGACTGCTTATGGGCTTCCEST: gi|124914949|gb|EH988823.1|EH988823
genomic: CAAGTCATATTTCACgttagcacat ... tgcatttcagACACACATTCACATAATCCCGCGTAAGGAACGTGACTGCTTATGGGCTTCC
EST: TCATATTTCAC ACACACATTCACATAATCCCGCGTAAGGAACGTGACTGCTTATGGGCTTCCEST: gi|125016696|gb|EL088965.1|EL088965
genomic: TCATATTTCACgttagcacat ... tgcatttcagACACACATTCACATAATCCCGCGTAAGGAACGTGACTGCTTATGGGCTTCC
EST: TTAACTTATTGGTTAACAACGGCGCAGCAGCTGGACAAGTCATATTTCAC ACACACATTCACATAATCCCGCGTAAGGAACGTGACTGCTTA
genomic: TTAACTTATTGGTTAACAACGGCGCAGCAGCTGGACAAGTCATATTTCACgttagcacat ... tgcatttcagACACACATTCACATAATCCCGCGTAAGGAACGTGACTGCTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTCATTTAACTTATTGGTTAACAACGGCGCAGCAGCTGGACAAGTCATATTTCACgttagcacatactgacttccccaactttccatttctcttatttcttgacgaaggaagtttctactaacagttccttttttgtttgcatttcag
- - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - GCTGGA