1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCACTCTCTTATCATTCCAAAGTTACATTATCCAACCTTAGAGGAAACTCCTCCCTCAgtaagttcctcttcctacattaaaatgttttatgctcatggattttgcgtgttttgaacatattaatttgctagttttgtgttgttgttgtttggaagtattttagtatatcgaaaatgtatatgcgtataagattttgattataggtctcctccaaggagcatgcag
species | Arabidopsis thaliana |
transcript | AT5G48545.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTATCATTCCAAAGTTACATTATCCAACCTTAGAGGAAACTCCTCCCTCA GTTGTTGCTGCCATGTGTTCTAAAGTGCCTCTTATCAGTAACGCCEST: gi|124727579|gb|EH818981.1|EH818981
genomic: TTATCATTCCAAAGTTACATTATCCAACCTTAGAGGAAACTCCTCCCTCAgtaagttcct ... gagcatgcagGTTGTTGCTGCCATGTGTTCTAAAGTGCCTCTTATCAGTAACGCC
EST: TTATCATTCCAAAGTTACATTATCCAACCTTAGAGGAAACTCCTCCCTCA GTTGTTGCTGCCAEST: gi|164071626|gb|ES011640.1|ES011640
genomic: TTATCATTCCAAAGTTACATTATCCAACCTTAGAGGAAACTCCTCCCTCAgtaagttcct ... gagcatgcagGTTGTTGCTGCCA
EST: CCAAAGTTACATTATCCAACCTTAGAGGAAACTCCTCCCTCA GTTGTTGCTGCCATGTGTTCTAAAGTGCCTCTTATCAGTAACGCCATCGTGEST: gi|124861619|gb|EH946056.1|EH946056
genomic: CCAAAGTTACATTATCCAACCTTAGAGGAAACTCCTCCCTCAgtaagttcct ... gagcatgcagGTTGTTGCTGCCATGTGTTCTAAAGTGCCTCTTATCAGTAACGCCATCGTG
EST: TTATCATTCCAAAGTTACATTATCCAACCTTAGAGGAAACTCCTCCCTCA GTTGTTGCTGCCA
genomic: TTATCATTCCAAAGTTACATTATCCAACCTTAGAGGAAACTCCTCCCTCAgtaagttcct ... gagcatgcagGTTGTTGCTGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCACTCTCTTATCATTCCAAAGTTACATTATCCAACCTTAGAGGAAACTCCTCCCTCAgtaagttcctcttcctacattaaaatgttttatgctcatggattttgcgtgttttgaacatattaatttgctagttttgtgttgttgttgtttggaagtattttagtatatcgaaaatgtatatgcgtataagattttgattataggtctcctccaaggagcatgcag
- - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - CTCCTC