1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaataaccatgattctttgtttaagatttaccatttgctctgttatttactgtgcgtctatgtagttttgctttggttacttgattacttggcggagttggtttgaatgtttatcaatggatagtgttatttacatgtgttagttattcttgaatctaaaaaggtatgaactttattttgtgtgtgtttcagGCACTCTCTTATCATTCCAAAGTTACATTATCCAACCTTAGAGGAAACTCCTCCCTCA
species | Arabidopsis thaliana |
transcript | AT5G48545.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTTGTGTATTCTGGATACTAATCCACTAAGTCATGG GCACTCTCTTATCATTCCAAAGTTACATTATCCAACCTTAGAGGAAACTCCEST: gi|125047925|gb|EL120194.1|EL120194
genomic: TTTGTGTATTCTGGATACTAATCCACTAAGTCATGGgtaataacca ... tgtgtttcagGCACTCTCTTATCATTCCAAAGTTACATTATCCAACCTTAGAGGAAACTCC
EST: TGTATTCTGGATACTAATCCACTAAGTCATGG GCACTCTCTTATCATTCCAAAGTTACATTATCCAACCTTAGAGGAAACTCC
genomic: TGTATTCTGGATACTAATCCACTAAGTCATGGgtaataacca ... tgtgtttcagGCACTCTCTTATCATTCCAAAGTTACATTATCCAACCTTAGAGGAAACTCC
tgttagttattcttgaatctaaaaaggtatgaactttattttgtgtgtgtttcagGCACTCTCTTATCATTCCAAAGTTACATTATCCAACCTTAGAGGAAACTCCTCCCTCA
atctaaa putative branch site (score: 3)
tatgaactttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataaccatgattctttgtttaagatttaccatttgctctgttatttactgtgcgtctatgtagttttgctttggttacttgattacttggcggagttggtttgaatgtttatcaatggatagtgttatttacatgtgttagttattcttgaatctaaaaaggtatgaactttattttgtgtgtgtttcagGCACTCTCTTATCATTCCAAAGTTACATTATCCAACCTTAGAGGAAACTCCTCCCTCA
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