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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAAACTGCGGCTGAAGACTCATAACCAAAATGTGAGTGATGTGCTTTCTATGTACGACGATATAACAATTAAGgcatgggatctcatccacaccctttctattttggttttgctatctcttctttaatgttttcgtgaagcaaaatcacctcatttcttattattatccag

Basic information

species Arabidopsis thaliana
transcript AT5G47840.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125237233|gb|EL251318.1|EL251318
EST:     ACCAAAATGTGAGTGATGTGCTTTCTATGTACGACGATATAACAATTAAG                         ATCGAGGGAAACCGCTCAAAAGAGGAAGTGTTTG
genomic: ACCAAAATGTGAGTGATGTGCTTTCTATGTACGACGATATAACAATTAAGgcatgggatc ... tattatccagATCGAGGGAAACCGCTCAAAAGAGGAAGTGTTTG
EST: gi|124735677|gb|EH827079.1|EH827079
EST:     ACCAAAATGTGAGTGATGTGCTTTCTATGTACGACGATATAACAATTAAG                         ATCGAGGGAAACCGCTCAAAAGA
genomic: ACCAAAATGTGAGTGATGTGCTTTCTATGTACGACGATATAACAATTAAGgcatgggatc ... tattatccagATCGAGGGAAACCGCTCAAAAGA
EST: gi|124825906|gb|EH910772.1|EH910772
EST:     ACCAAAATGTGAGTGATGTGCTTTCTATGTACGACGATATAACAATTAAG                         ATCGAGGGAAACC
genomic: ACCAAAATGTGAGTGATGTGCTTTCTATGTACGACGATATAACAATTAAGgcatgggatc ... tattatccagATCGAGGGAAACC
EST: gi|125093883|gb|EL151422.1|EL151422
EST:     TCTATGTACGACGATATAACAATTAAG                         ATCGAGGGAAACCGCTCAAAAGAGGAAGTGTTTGCCCAGATCGATTCTTCT
genomic: TCTATGTACGACGATATAACAATTAAGgcatgggatc ... tattatccagATCGAGGGAAACCGCTCAAAAGAGGAAGTGTTTGCCCAGATCGATTCTTCT