1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgaatgattgttttgacctccgatttttgaatgcgatttgcgagcttgtaattttggattttattgtgtgtggaaggaatatagATTGTGGCGGCTGAAAAATCGGAGCCTCTGAAAATTATGATATCAGGAGCTCCTGCTTCTGGTAAAGGTACACAATGCGAGCTGATTACTCACAAA
species | Arabidopsis thaliana |
transcript | AT5G47840.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCACCGACGTGTATCAAGATCTTCGTCGATTATCGCCCCCAAATTTCAG ATTGTGGCGGCTGAAAAATCGGAGCCTCTGAAAATTATGATATCAGGAGCTEST: gi|125103744|gb|EL158037.1|EL158037
genomic: GGCACCGACGTGTATCAAGATCTCCGTCGATTATCGCTCCCAAATTTCAGgtgaatgatt ... aggaatatagATTGTGGCGGCTGAAAAATCGGAGCCTCTGAAAATTATGATATCAGGAGCT
EST: GGCACCGACGTGTATCAAGATCTCCGTCGATTATCGCTCCCAAATTTCAG ATTGTGGCGGCTGAAAAATCGGAG
genomic: GGCACCGACGTGTATCAAGATCTCCGTCGATTATCGCTCCCAAATTTCAGgtgaatgatt ... aggaatatagATTGTGGCGGCTGAAAAATCGGAG
aatgcgatttgcgagcttgtaattttggattttattgtgtgtggaaggaatatagATTGTGGCGGCTGAAAAATCGGAGCCTCTGAAAATTATGATATCAGGAGCTCCTGCTTCTGGTAAAGGTACACAATGCGAGCTGATTACTCACAAA
taattttggattttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaatgattgttttgacctccgatttttgaatgcgatttgcgagcttgtaattttggattttattgtgtgtggaaggaatatagATTGTGGCGGCTGAAAAATCGGAGCCTCTGAAAATTATGATATCAGGAGCTCCTGCTTCTGGTAAAGGTACACAATGCGAGCTGATTACTCACAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT