1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATTGTGGCGGCTGAAAAATCGGAGCCTCTGAAAATTATGATATCAGGAGCTCCTGCTTCTGGTAAAGGTACACAATGCGAGCTGATTACTCACAAAgtaagcttattgatcttgttattggatactattctcatgaacccaattcaatttgaaaatactttgatcgattttgtcaatgaaccttaactcggccact...
species | Arabidopsis thaliana |
transcript | AT5G47840.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAGCTCCTGCTTCTGGTAAAGGTACACAATGCGAGCTGATTACTCACAAA TATGGTTTGGTGCATATCTCTGCTGGAGATTTGCTGAGGGCTGAAATCGCTEST: gi|124902280|gb|EH976360.1|EH976360
genomic: GAGCTCCTGCTTCTGGTAAAGGTACACAATGCGAGCTGATTACTCACAAAgtaagcttat ... tggtatgcagTATGGTTTGGTGCATATCTCTGCTGGAGATTTGCTGAGGGCTGAAATCGCT
EST: GCGAGCTGTATTACTCACAAA TATGGTTTGGTGCATATCTCTGCTGGAGATTTGCTGAGGGCTGAAATCGCT
genomic: GCGAGCTG-ATTACTCACAAAgtaagcttat ... tggtatgcagTATGGTTTGGTGCATATCTCTGCTGGAGATTTGCTGAGGGCTGAAATCGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGTGGCGGCTGAAAAATCGGAGCCTCTGAAAATTATGATATCAGGAGCTCCTGCTTCTGGTAAAGGTACACAATGCGAGCTGATTACTCACAAAgtaagcttattgatcttgttattggatactattctcatgaacccaattcaatttgaaaatactttgatcgattttgtcaatgaaccttaactcggccact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaacccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaatac