1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ataaaactaggttcattagcttctgtcacattgctttgactctttatcctatgaatactctagcctcatttgattctcgcctactctgcttttgggacagGTTCCTGAAGAAATTCTAATTGAAAGAGTTGTTGGGCGTCGATTGGATCCTGTCACAGGAAAGATCTACCACTTGAAGTATTCGCCTCCAGAGACAGAAG
species | Arabidopsis thaliana |
transcript | AT5G47840.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATTCCAGCCTGATCTATTCATTGTCCTCGAA GTTCCTGAAGAAATTCTAATTGAAAGAGTTGTTGGGCGTCGATTGGATCCTEST: gi|125001535|gb|EL073804.1|EL073804
genomic: ATTCCAGCCTGATCTATTCATTGTCCTCGAAgtaagcactg ... tttgggacagGTTCCTGAAGAAATTCTAATTGAAAGAGTTGTTGGGCGTCGATTGGATCCT
EST: ATTTGGATTCCAGCCTGATCTATTCATTGTCCTCGAA GTTCCTGAAGAAATTCTAATTGAAAGAGTTGTTGGGCGTCGATTGGATCCTEST: gi|125281979|gb|EL296064.1|EL296064
genomic: ATTTGGATTCCAGCCTGATCTATTCATTGTCCTCGAAgtaagcactg ... tttgggacagGTTCCTGAAGAAATTCTAATTGAAAGAGTTGTTGGGCGTCGATTGGATCCT
EST: TTTGGATTCCAGCCTGATCTATTCATTGTCCTCGAA GTTCCTGAAGAAATTCTAATTGAAAGAGTTGTTGGGCGTCGATTGGATCCTEST: gi|124736103|gb|EH827505.1|EH827505
genomic: TTTGGATTCCAGCCTGATCTATTCATTGTCCTCGAAgtaagcactg ... tttgggacagGTTCCTGAAGAAATTCTAATTGAAAGAGTTGTTGGGCGTCGATTGGATCCT
EST: TTCATTGTCCTCGAA GTTCCTGAAGAAATTCTAATTGAAAGAGTTGTTGGGCGTCGATTGGATCCTEST: gi|125240241|gb|EL254326.1|EL254326
genomic: TTCATTGTCCTCGAAgtaagcactg ... tttgggacagGTTCCTGAAGAAATTCTAATTGAAAGAGTTGTTGGGCGTCGATTGGATCCT
EST: CCTGATCTATTCATTGTCCTCGAA GTTCCTGAAGAAATTCTAATTGAAAGAGTTGTTGGGCGTCGATTGGATCCTEST: gi|47832013|gb|CK121697.1|CK121697
genomic: CCTGATCTATTCATTGTCCTCGAAgtaagcactg ... tttgggacagGTTCCTGAAGAAATTCTAATTGAAAGAGTTGTTGGGCGTCGATTGGATCCT
EST: CAGCTCTCAAGGGATTTGGATTCCAGCCTGATCTATTCATTGTCCTGGAA GTTCCTGAAGAAATTCTAATTGAAAGAGTTGTTGGGCGTCGATTGGATCCTEST: gi|164192404|gb|ES027864.1|ES027864
genomic: CAGCTCTCAAGGGATTTGGATTCCAGCCTGATCTATTCATTGTCCTCGAAgtaagcactg ... tttgggacagGTTCCTGAAGAAATTCTAATTGAAAGAGTTGTTGGGCGTCGATTGGATCCT
EST: CAGCTCTCAAGGGATTTGGATTCCAGCCTGATCTATTCATTGTCCTGGAA GTTCCTGAAGAAATTCT
genomic: CAGCTCTCAAGGGATTTGGATTCCAGCCTGATCTATTCATTGTCCTCGAAgtaagcactg ... tttgggacagGTTCCTGAAGAAATTCT
atcctatgaatactctagcctcatttgattctcgcctactctgcttttgggacagGTTCCTGAAGAAATTCTAATTGAAAGAGTTGTTGGGCGTCGATTGGATCCTGTCACAGGAAAGATCTACCACTTGAAGTATTCGCCTCCAGAGACAGAAG
atttgat putative branch site (score: 5)
cctactctgctttt putative PPT
atttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataaaactaggttcattagcttctgtcacattgctttgactctttatcctatgaatactctagcctcatttgattctcgcctactctgcttttgggacagGTTCCTGAAGAAATTCTAATTGAAAGAGTTGTTGGGCGTCGATTGGATCCTGTCACAGGAAAGATCTACCACTTGAAGTATTCGCCTCCAGAGACAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- aaaacta