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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGAGAGTATCCTCCAGATATGCAGTGCAAAGACAAATTTCTCCTGCAAAGTACCATTGTACCTCCACACACTGATGTGGATGAACTTCCTCAAGACACTgtaagaaatccaagtttaaaactttttttattaagattcttcttgtttctgcagtttttggaaaacaaattgacattatatatgcaatacttgtgtgtctag

Basic information

species Arabidopsis thaliana
transcript AT5G47180.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G47180.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA05G05280.1 (Glycine max), 5'ss of exon 4
ACGAGAGTATCCTCCAGATATGCAGTGCAAAGACAAATTTCTCCTGCAAAGTACCATTGTACCTCCACACACTGATGTGGATGAACTTCCTCAAGACACTgtaagaaatccaagtttaaaactttttttattaagattcttcttgtttctgcagtttttggaaaacaaattgacattatatatgcaatacttgtgtgtctag
|| ||| || |||||||| ||||| ||||||||||| |||||| |||| ||||| || ||   |||| |||||||||| ||||| ||||| | ||| ||||| ||| | ||||   |     || ||||||        ||||    | |  |      |  |||||||||||        ||    |  ||  |  |  ||
ACAAGAATACCCTCCAGACATGCAATGCAAAGACAAGTTTCTCTTGCAGAGTACAATAGTGAATCCAAACACTGATGTTGATGATCTTCCACCAGATACTgtgagagagccaacaatgtcg-ttgttttataggataagttctaaaatttaaaaag---gagaaacaaattgatcaagatcattgcttgttttggcttgcag

upper sequence: AT5G47180.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv00s0287g00080.t01 (Vitis vinifera), 5'ss of exon 3
ACGAGAGTATCCTCCAGATATGCAGTGCAAAGACAAATTTCTCCTGCAAAGTACCATTGTACCTCCACACACTGATGTGGATGAACTTCCTCAAGACACTgtaagaaatccaagtttaaaactttttttattaa--gattct----tcttgtttctgcagtttttggaaaacaaattgacattatata---tgcaatacttgtgtgtctag----------
             |||||||||||||||||||| || ||||| ||||| ||||| || || |||||||| |||||| | ||||| || || || ||  |||||||||     | |  | ||  | ||  ||| |  || |      |||| |||  |   ||||   ||||  |   |    | |||    ||  | | |  ||  | |            
NNNNNNNNNNNNNCCAGATATGCAGTGCAAAGATAAGTTTCTTCTGCAGAGTACAATAGTGCCTCCACATACTGATCTTGATGAGCTCCCACAGGATGCTgtaagaatatttaatgaataatgtcttcaattgattgacttgaatatcttattttgggcattttaaaaaaatgatgggttcctttattccctgggaaattgatggttatttttgcaaccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86076486|gb|DR372243.1|DR372243
EST:     GTACCATTGTACCTCCACACACTGATGTGGATGAACTTCCTCAAGACACT                         TTCACCAAGGATAGTGGAAAGACATTAACAGAATGTAAGCTCAAAGTCTCT
genomic: GTACCATTGTACCTCCACACACTGATGTGGATGAACTTCCTCAAGACACTgtaagaaatc ... gtgtgtctagTTCACCAAGGACAGTGGAAAGACATTAACAGAATGTAAGCTCAAAGTCTCT