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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAAAACAACATCTCCAAAGAAGTATTTTGTAAGACCTAACACTGGTGTCATTCAGCCATGGGACTCTTGCATCATTAGAGgtatagtaattcctcatactctaacttctttcattagcagtttaaaacttgaacatggagatgattaagatcttcttaattatag

Basic information

species Arabidopsis thaliana
transcript AT5G47180.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G47180.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA11G04030.1 (Glycine max), 5'ss of exon 3
GTGAAAACAACATCTCCAAAGAAGTATTTTGTAAGACCTAACACTGGTGTCATTCAGCCATGGGACTCTTGCATCATTAGAGgtatagta----attcctcatactctaacttctttcattagcag-------tttaaaacttgaacatgg-agatg--attaagatcttcttaattatag-
|| ||||| || ||||||||||| || |||||  |||||||||| | |||  | ||||| ||||||||||| ||||| ||||||   |      | |  | |||     ||||||||||||    |       | ||     | |    || | |||  || ||| | ||| ||  |  |  
GTCAAAACCACTTCTCCAAAGAAATACTTTGTGCGACCTAACACCGCTGTTGTACAGCCCTGGGACTCTTGTATCATCAGAGgtgctgcttcgtactatttataaggctacttctttcattgattgagatatgtgtattttcttagttcggtaaatgaaatgaagcttttcatatcttcaaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86076486|gb|DR372243.1|DR372243
EST:     AGACCTAACACTGGTGTCCATTCAGCCATGGGACTCTTGCATYMTTAGAG                         TTACTCTACAAGCGCAACGAGAGTATCCTCCAGATATGCAGTGCAAAGACA
genomic: AGACCTAACACTGGTGT-CATTCAGCCATGGGACTCTTGCATCATTAGAGgtatagtaat ... ttaattatagTTACTCTACAAGCGCAACGAGAGTATCCTCCAGATATGCAGTGCAAAGACA