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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGAACTTGAGAAGCAAAGCTACTGTGATCTTAAAGTTGCCAATAAAACAGAGAACTATGTTGCTTTCAAGgtaatttctgcatcaaaccaccaacttcatatgctttgtcttgtgatcaagttatttcgtttgttacaatggcttctttcttttgtgtttttggcttcatcaatcag

Basic information

species Arabidopsis thaliana
transcript AT5G47180.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G47180.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA05G05280.1 (Glycine max), 5'ss of exon 2
TTGAACTTGAGAAGCAAAGCTACTGTGATCTTAAAGTTGCCAATAAAACAGAGAACTATGTTGCTTTCAAGgtaatttctgcatcaaaccaccaacttcatatgctttgtcttgtgatcaag-ttatttcgtttgttacaatggcttctttcttttgtgtt-tttggcttcatcaatcag
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TTGAGCTGGAGAAGCAAACATACTGTGATCTTAAAGTTCTGAATAACACAGGGAACTACGTTGCCTTTAAGgtactct----attaacttgttt-ctggacatgcttt-tctgctgttgattcttagtgcaggattcatgattacatttgatttcagtgctattttgcttttt--gctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124818052|gb|EH902918.1|EH902918
EST:     ATCTTAAAGTTGCCAATAAAACAGAGAACTATGTTGCTTTCAAG                         GTGAAAACAACATCTCCAAAGAAGTATTTTGTAAGA
genomic: ATCTTAAAGTTGCCAATAAAACAGAGAACTATGTTGCTTTCAAGgtaatttctg ... catcaatcagGTGAAAACAACATCTCCAAAGAAGTATTTTGTAAGA