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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agataaggctgattctcttggttattaagaaaattgctgtttgaaactttttggagggtcttcctttggatgacatttggaatttttgattttgtttcagTTGAACTTGAGAAGCAAAGCTACTGTGATCTTAAAGTTGCCAATAAAACAGAGAACTATGTTGCTTTCAAG

Basic information

species Arabidopsis thaliana
transcript AT5G47180.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G47180.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA05G05280.1 (Glycine max), 3'ss of exon 1
agataaggctgattctcttggttattaagaaaattgctgtttgaaactttttggagggtcttcctttggatgacatttggaatttttgattttgttt-------cagTTGAACTTGAGAAGCAAAGCTACTGTGATCTTAAAGTTGCCAATAAAACAGAGAACTATGTTGCTTTCAAG
         ||||| | |    || || ||||       | ||||  |  ||      |     ||  | |    || ||   |  | ||  |||||       ||||||| || ||||||||||  ||||||||||||||||||   ||||| |||| |||||| ||||| || |||
-----tatttgatt-tatcaaatagtaggaaagcataaatctgaa-ttccttccccaattaattttgagttcttcttcggttatgctcataatgtttatgtcaacagTTGAGCTGGAGAAGCAAACATACTGTGATCTTAAAGTTCTGAATAACACAGGGAACTACGTTGCCTTTAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actttttggagggtcttcctttggatgacatttggaatttttgattttgtttcagTTGAACTTGAGAAGCAAAGCTACTGTGATCTTAAAGTTGCCAATAAAACAGAGAACTATGTTGCTTTCAAG
                                      ttttgat  putative branch site (score: 4)
                                            ttttgtttc  CT-rich tract
                                   aatttttgattttgtt  TA-rich tract