Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAACCCCTCAAATCGAGGTCACATTTGAAgtggacgccaacggtattcttaatgtgaaagcagaggacaaggcgagtggtaaatcagagaagattacaatcacaaacgagaagggtcgtctgagccaagaagagattgaccggatggtgaaggaggcagaggagtttgcagaggaagacaagaaggtgaaggag

Basic information

species Arabidopsis thaliana
transcript AT5G42020.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G42020.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA05G36620.2 (Glycine max), 5'ss of exon 8
AGGAACCCCTCAAATCGAGGTCACATTTGAAgtggacgccaacggtattcttaatgtgaaagcagaggacaaggcgagtggtaaatcagagaagattacaatcacaaacgagaagg--------gtcgtctgagccaagaagagatt---gaccggatggtgaaggaggcagagg-agtttgcagaggaagacaagaaggtgaaggag-------
            |    || ||||  ||  |    |||  || ||   |||||    | ||| |   || |    |  | |  || ||||| || || ||     | || ||||||            ||   ||    || ||  |    |||      |  |  | | |||   || |    ||  | ||||||   |   |  ||       
------------AGAAAAGATCACCATTACAA---ACGAAAAGGGACGTCTTAGCCAGGAAGAAATTGAGAGAATGGTTCGCGAAGCAGAGGAGTTTGCAGAGGAAGACAAGAAGgtgaaggagaggatcgatgctcgcaacagtcttgaaacctatgtatacaacatgaagaaccagatcagtgacaaggacaagctcgctgacaagttggagt