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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattacttattctcttttttttcttctatatgtttgtgatgatattgttggtttaattctttcttattgtatttggcagATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTACCAGATTGTGAACAAGGATGGTAAGCCATACATTCAAGTCAAGATCAAGGATGGT

Basic information

species Arabidopsis thaliana
transcript AT5G42020.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G42020.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: LOC_Os02g02410.1 (Oryza sativa), 3'ss of exon 2
gtaattac-ttattctcttttttttcttctatatgtttgtgatgat-attgttggtttaatt---ctttcttattgtatttggcagATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTACCAGATTGTGAACAAGGATGGTAAGCCATACATTCAAGTCAAGATCAAGGATGGT
|||||  |  | | | || |  |  ||  ||| |  |  || |||| | || ||  | |  |   || | | ||| |  ||| ||| ||||| |||||||| ||||| | ||||| ||||||||| || ||| |||||||||||||||| |||||||| |||||||| ||||||||||||||||| 
gtaatggcactttaccctatgctcgctcttatttcctgttgttgatcactgctgcctgatctgacctgtataattattcttg-cagGTTTGAAGACAAGGAAGTTCAGAGGGACATGAAACTTGTCCCCTACAAGATTGTGAACAAGGACGGTAAGCCCTACATTCAGGTCAAGATCAAGGATGGA

upper sequence: AT5G42020.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GRMZM2G415007_T01 (Zea mays), 3'ss of exon 2
gtaattacttattctctt--ttttttcttctatatgtttgtgatgatattgttggtttaattctttcttattgt----atttggcagATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTACCAGATTGTGAACAAGGATGGTAAGCCATACATTCAAGTCAAGATCAAGGATGGT
||| |  ||   || |    ||  ||||  ||| |  |   | ||    |  ||  |    |||| | | |  |    |||    || ||| |||| ||||| || || | ||||| ||||||||| || ||| ||||| | ||||||||||| |||||||||||||| ||||||||||||||||| 
gtagtgcctctctcccacaattgcttctattatttcgtctcgctgtgggttatgtctggcgtcttacctgtaatgcccattgcttagGTTTCAGGATAAGGAAGTCCAGAGGGACATGAAACTTGTCCCCTACAAGATTATTAACAAGGATGGCAAGCCATACATTCAGGTCAAGATCAAGGATGGG

upper sequence: AT5G42020.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GRMZM2G114793_T01 (Zea mays), 3'ss of exon 2
----------------gtaattacttattctcttttttttctt-ctatatgtttgtgatgatattgttggtttaattctttcttattgtatttggcagATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTACCAGATTGTGAACAAGGATGGTAAGCCATACATTCAAGTCAAGATCAAGGATGGT
                  | |||||| |  |   |||  |||   | |  |||  |  ||   |  |   |||| |  |  |  ||| |||||   || || | ||||||||| || || | ||||| ||||||||| || ||| ||||| | ||||||||||| ||||| |||||||| ||||||||||||||||| 
gtaacacctctctcctacagttacttctgttgaatttcgtctcgttgtgggttatttctggcgtcttaactttagtaatgccccatt-tattt---agGTTCGCGGACAAGGAAGTCCAGAGGGACATGAAACTTGTTCCCTACAAGATTATTAACAAGGATGGCAAGCCCTACATTCAGGTCAAGATCAAGGATGGG

upper sequence: AT5G42020.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA08G02940.1 (Glycine max), 3'ss of exon 2
gtaattacttattctcttttttttcttctatatgtttgtgatgatattgttggtttaattctttcttattgtatttggcagATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTACCAGATTGTGAACAAGGATGGTAAGCCATACATTCAAGTCAAGATCAAGGATGGT
||||  ||||  ||   || ||   || |     ||||   || |    |   ||   | ||  |||      ||| |||| || || || ||||| |||||||| |||| ||| ||||| |||||  ||||||| ||||||||||| || || |||||||| || || || |||||||||
gtaag-acttgctcaagttgttgatttttgacaatttgatttggtgggatcaatt-gttactgacttgcatctttttgcagGTTCGAAGATAAGGAAGTTCAAAAAGACATGAAGCTTGTTCCTTATAAGATTGTCAACAAGGATGGAAAACCTTACATTCAGGTGAAAATTAAGGATGGT

upper sequence: AT5G42020.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv02s0025g02140.t01 (Vitis vinifera), 3'ss of exon 2
---------gtaattactta----ttctcttttttttcttctatatgtttgtgatgatattgttggtttaattctttcttattgtatttggcagATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTACCAGATTGTGAACAAGGATGGTAAGCCATACATTCAAGTCAAGATCAAGGATGGT
          ||  ||  ||    || |  | | |   || |||  ||| |  | ||  || ||| |     | ||  | | |   |||| ||| ||||| || ||||||||||| ||||||| ||| ||||| || ||| | ||||| ||||||||||| ||||| |||||||||||||||||||||||||||
gtaatacgtctatctatctaaagcttttggtctatgcattgtattagttggcaaggaactttttgctgaggcttttaatcact---tttgacagGTTTGAAGATAAGGAGGTTCAGAAGGACATGAAGCTTGTTCCGTACAACATTGTTAACAAGGATGGGAAGCCTTACATTCAAGTCAAGATCAAGGATGGT

upper sequence: AT5G42020.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv16s0098g01580.t01 (Vitis vinifera), 3'ss of exon 2
-------gtaattactt--attctcttttttttcttctat----atgtttgtgatga----tattgttggtttaa------ttctttcttattgtatttg--gcagATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTACCAGATTGTGAACAAGGATGGTAAGCCATACATTCAAGTCAAGATCAAGGATGGT
        ||| | |||  ||   |||| | ||| | |      || |||   ||||     ||    | | |||      || || | | |||| |||   | |||||||| || || |||||||||||||||| ||| ||| | || | | |||| |||||||||||||| |||||||| || ||||||||||| |||||||| 
gtatgtgataaatcctttaatctcctttctgttcatattcgttgatcttttgaatgaagcccatcaaggctctaacctggttttttgccttttgttttttctgtagATTTGATGATAAAGAGGTTCAAAAGGACATGAAGCTTTTCCCATTCAAGATCGTGAACAAGGATGGAAAGCCATATATACAAGTCAAGATTAAGGATGGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86060504|gb|DR356261.1|DR356261
EST:     GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAA                         ATTTGAGGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTATCAGA
genomic: GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAAgtaattactt ... tatttggcagATTTGAGG-ACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTACCAGA
EST: gi|164225089|gb|EL978122.1|EL978122
EST:     TTGATCGGGCGAAA                         ATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTACCAGAT
genomic: TTGATCGGGCGAAAgtaattactt ... tatttggcagATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTACCAGAT
EST: gi|86060469|gb|DR356226.1|DR356226
EST:     GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAA                         ATTTGAGGACAAGGAGGTTCCAAAGGACAGGAAACTTGTACCTTATCAGAT
genomic: GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAAgtaattactt ... tatttggcagATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTACCAGAT
EST: gi|86060502|gb|DR356259.1|DR356259
EST:     GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAA                         ATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTA
genomic: GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAAgtaattactt ... tatttggcagATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTA
EST: gi|86060472|gb|DR356229.1|DR356229
EST:     GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAA                         ATTTGAGGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTATCAGA
genomic: GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAAgtaattactt ... tatttggcagATTTGAGG-ACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTACCAGA
EST: gi|86060491|gb|DR356248.1|DR356248
EST:     GTTAATCCTGAGAGGACTGTCTTAGACGTTAAGAGATTGATCGGGCGAAA                         ATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTATCAGAT
genomic: GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAAgtaattactt ... tatttggcagATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTACCAGAT
EST: gi|86060495|gb|DR356252.1|DR356252
EST:     GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAA                         ATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTATCAGAT
genomic: GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAAgtaattactt ... tatttggcagATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTACCAGAT
EST: gi|86060444|gb|DR356201.1|DR356201
EST:     GTTAATCCTGAGAGGACTGTCTTCGACGTTAANAGATTGATCGGGCGAAA                         ATTTTGAGGACAAGGAGGT-CAAAAGGACAGGAAACTTG
genomic: GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAAgtaattactt ... tatttggcagATTT-GAGGACAAGGAGGTTCAAAAGGACAGGAAACTTG
EST: gi|86060481|gb|DR356238.1|DR356238
EST:     GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAA                         ATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTATCAGAT
genomic: GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAAgtaattactt ... tatttggcagATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTACCAGAT
EST: gi|125039017|gb|EL111286.1|EL111286
EST:     TTAAGAGATTGATCGGGCGAAA                         ATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTACCAGAT
genomic: TTAAGAGATTGATCGGGCGAAAgtaattactt ... tatttggcagATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTACCAGAT
EST: gi|86060482|gb|DR356239.1|DR356239
EST:     GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAA                         ATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTG
genomic: GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAAgtaattactt ... tatttggcagATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTG
EST: gi|86060508|gb|DR356265.1|DR356265
EST:     GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAA                         ATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTATCAGAT
genomic: GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAAgtaattactt ... tatttggcagATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTACCAGAT
EST: gi|86060464|gb|DR356221.1|DR356221
EST:     TTAATCCTGAGAGGA-TGGNCTTCGACGTTAAGAGATTGATCGGGCGAAA                         ATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTATCAGAT
genomic: TTAATCCTGAGAGGACTGT-CTTCGACGTTAAGAGATTGATCGGGCGAAAgtaattactt ... tatttggcagATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTACCAGAT
EST: gi|86060453|gb|DR356210.1|DR356210
EST:     GT-AATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAA                         ATTTGAGGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTATCAGA
genomic: GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAAgtaattactt ... tatttggcagATTTGAGG-ACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTACCAGA
EST: gi|86060452|gb|DR356209.1|DR356209
EST:     GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAA                         ATTTGAGGACAAGGAGATTCAAAAGGACAGGAAACTTGTACCTTATCAGAT
genomic: GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAAgtaattactt ... tatttggcagATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTACCAGAT
EST: gi|124846345|gb|EH930782.1|EH930782
EST:     GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAA                         ATTTAGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTA
genomic: GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAAgtaattactt ... tatttggcagATTT-GAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTA
EST: gi|86060498|gb|DR356255.1|DR356255
EST:     TTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCCGAAA                         ATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTATCAGA
genomic: TTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGC-GAAAgtaattactt ... tatttggcagATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTACCAGA
EST: gi|86060470|gb|DR356227.1|DR356227
EST:     GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAA                         ATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTATCAGAT
genomic: GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAAgtaattactt ... tatttggcagATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTACCAGAT
EST: gi|86060460|gb|DR356217.1|DR356217
EST:     GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGANATTGATCGGGCGAAA                         ATTTGAGGACNAGGAGGTTCAAAAGGACAGGNAACTTGTACCTTATCAGAT
genomic: GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAAgtaattactt ... tatttggcagATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTACCAGAT
EST: gi|86060499|gb|DR356256.1|DR356256
EST:     TTAATCCTGAGAGGACTGGTCTTCGACGTTAAGAGATTGATCGGNCGAAA                         ATTTGAGGACNAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTA
genomic: TTAATCCTGAGAGGACTG-TCTTCGACGTTAAGAGATTGATCGGGCGAAAgtaattactt ... tatttggcagATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTA
EST: gi|86060485|gb|DR356242.1|DR356242
EST:     GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAA                         ATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTATCAGAT
genomic: GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAAgtaattactt ... tatttggcagATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTACCAGAT
EST: gi|86060501|gb|DR356258.1|DR356258
EST:     GNTAATCCTGAGAGGACTGTCTTCGACGTTAANAGATTGATCGGGCGAAA                         ATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTATCAGAT
genomic: GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAAgtaattactt ... tatttggcagATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTACCAGAT
EST: gi|86060483|gb|DR356240.1|DR356240
EST:     GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAA                         ATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTATCAGAT
genomic: GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAAgtaattactt ... tatttggcagATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTACCAGAT
EST: gi|86060445|gb|DR356202.1|DR356202
EST:     GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAA                         ATTTGAGGACAA
genomic: GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAAgtaattactt ... tatttggcagATTTGAGGACAA
EST: gi|86060461|gb|DR356218.1|DR356218
EST:     GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAA                         ATTTGAGGACAAGGAGGTTCA
genomic: GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAAgtaattactt ... tatttggcagATTTGAGGACAAGGAGGTTCA
EST: gi|86060434|gb|DR356191.1|DR356191
EST:     GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAA                         ATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTATCAGA
genomic: GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAAgtaattactt ... tatttggcagATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTACCAGA
EST: gi|86060492|gb|DR356249.1|DR356249
EST:     GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAA                         ATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTATCAGAT
genomic: GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAAgtaattactt ... tatttggcagATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTACCAGAT
EST: gi|86060505|gb|DR356262.1|DR356262
EST:     GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAA                         ATTTGAGGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTA
genomic: GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAAgtaattactt ... tatttggcagATTTGAGG-ACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTA
EST: gi|86060465|gb|DR356222.1|DR356222
EST:     GTTAATCCTGAGAGGACTGTCTTCGACGNTAAGANATTGATCGGGCGAAA                         ATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTATCAGAT
genomic: GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAAgtaattactt ... tatttggcagATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTACCAGAT
EST: gi|86060457|gb|DR356214.1|DR356214
EST:     GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAA                         ATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGGACCTTATCAGAT
genomic: GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAAgtaattactt ... tatttggcagATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTACCAGAT
EST: gi|86060466|gb|DR356223.1|DR356223
EST:     GTTAATCCTGAGAGGACTGTCTTCGACGTTAANAGATTGATCGGGCGAAA                         ATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTA
genomic: GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAAgtaattactt ... tatttggcagATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTA
EST: gi|86060471|gb|DR356228.1|DR356228
EST:     GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAA                         ATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTATCAGAT
genomic: GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAAgtaattactt ... tatttggcagATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTACCAGAT
EST: gi|86060486|gb|DR356243.1|DR356243
EST:     GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAA                         ATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTATCAGAT
genomic: GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAAgtaattactt ... tatttggcagATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTACCAGAT
EST: gi|86060507|gb|DR356264.1|DR356264
EST:     GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAA                         ATTTGAGGACAAGGGAGGTTCAAAAGGACAGGAAACTTGTACCTTATCAGA
genomic: GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAAgtaattactt ... tatttggcagATTTGAGGACAAGG-AGGTTCAAAAGGACAGGAAACTTGTACCTTACCAGA
EST: gi|86060473|gb|DR356230.1|DR356230
EST:     GTTAATCC--AGAGGACTGTCTTCGACGTTAAGAGATTGATCGGCCGAAA                         ATTTGAGGACAAGGAGG
genomic: GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAAgtaattactt ... tatttggcagATTTGAGGACAAGGAGG
EST: gi|86060490|gb|DR356247.1|DR356247
EST:     GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAA                         ATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTATCAGAT
genomic: GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAAgtaattactt ... tatttggcagATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTACCAGAT
EST: gi|86060462|gb|DR356219.1|DR356219
EST:     GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAA                         ATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTATCAGAT
genomic: GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAAgtaattactt ... tatttggcagATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTACCAGAT
EST: gi|86060488|gb|DR356245.1|DR356245
EST:     GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAA                         ATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTATCAGAT
genomic: GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAAgtaattactt ... tatttggcagATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTACCAGAT
EST: gi|47829411|gb|CK119095.1|CK119095
EST:     GTTAATCCAGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAA                         ATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTACCAGAT
genomic: GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAAgtaattactt ... tatttggcagATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTACCAGAT
EST: gi|86060467|gb|DR356224.1|DR356224
EST:     GTTAATCCTGAGAGGACTGTCTTCGACGTTAANAGATTGATCGGGCGAAA                         ATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTATCANAT
genomic: GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAAgtaattactt ... tatttggcagATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTACCAGAT
EST: gi|86060459|gb|DR356216.1|DR356216
EST:     GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAA                         ATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACC
genomic: GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAAgtaattactt ... tatttggcagATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACC
EST: gi|86060450|gb|DR356207.1|DR356207
EST:     GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAA                         ATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTATCAGAT
genomic: GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAAgtaattactt ... tatttggcagATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTACCAGAT
EST: gi|86060489|gb|DR356246.1|DR356246
EST:     GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAA                         ATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTATCAGAT
genomic: GTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAAgtaattactt ... tatttggcagATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTACCAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctatatgtttgtgatgatattgttggtttaattctttcttattgtatttggcagATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTACCAGATTGTGAACAAGGATGGTAAGCCATACATTCAAGTCAAGATCAAGGATGGT
                          gtttaat  putative branch site (score: 4)
                                ttctttcttattgt  CT-rich tract
                           tttaattctttcttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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gtaattacttattctcttttttttcttctatatgtttgtgatgatattgttggtttaattctttcttattgtatttggcagATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTACCTTACCAGATTGTGAACAAGGATGGTAAGCCATACATTCAAGTCAAGATCAAGGATGGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG