Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catttcattgataatagagtgaaattaagttttgagattggttgattggtgtttttggttttgatagttttattgacgattgaaattttttacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGATCAGTTATTGGGATAGATCTTGGTACCACTTACTCTTGTGTTGGTGTTTA

Basic information

species Arabidopsis thaliana
transcript AT5G42020.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G42020.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv16s0098g01580.t01 (Vitis vinifera), 3'ss of exon 1
catttcattgataatagagtgaaattaagttttgagattggttgattggtgtttttggttttgatagtttt-attgacgattgaaattttttacgatt---cagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGATCAGTTATTGGGATAGATCTTGGTACCACTTACTCTTGTGTTGGTGTTTA
   || |   ||  | |||| ||| |   |       ||  ||   |   |||||  |  |  || |  || | ||  |||     |  | |||  |    ||||||||||  ||||| | || |  |||||||| ||  | |  || || ||| |||||||||| || |||||||| || |||||||||||||||||||||||
---tttaactatgtttgagttaaactttatccctgagttctttaggtaa-gttttcagaatcaatggaattgaatgttgatgaggttaatctacactatggcagGATGTTTGGTTGCGATCTCTATCGCAAAAGAGGAATCCAACAAATTGGGAACAGTTATTGGTATTGATCTTGGAACAACTTACTCTTGTGTTGGTGTTTA

upper sequence: AT5G42020.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv02s0025g02140.t01 (Vitis vinifera), 3'ss of exon 1
-catttcattgataatagagtgaaattaagttttgagattggttgattggtgtttttggttttgatagttttatt-gacgattgaaattttt----tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGATCAGTTATTGGGATAGATCTTGGTACCACTTACTCTTGTGTTGGTGTTTA
  |    | ||| ||    |   |  | |  |  || | |||||  |  ||| |   || | ||  || |||||| ||   || | ||||      |    | |||||| | ||  |||  |||||| ||||||||| || || || ||||| ||| | || || |||||||||||||| || || ||||| ||||||||||||||
agaaagaactgacaagctggatcacctgaact--gaaaatggttc-taagtgct---ggctgtgtgagctttatttgagtcttaatatttccaaactgtattgcagGATTTCTAGCTGCAATTTCCATTGCAAAAGAGGAAGCAACCAAGTTGGGAACTGTCATCGGGATAGATCTTGGAACAACCTACTCATGTGTTGGTGTTTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86060504|gb|DR356261.1|DR356261
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060469|gb|DR356226.1|DR356226
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060502|gb|DR356259.1|DR356259
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060472|gb|DR356229.1|DR356229
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060491|gb|DR356248.1|DR356248
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060495|gb|DR356252.1|DR356252
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060444|gb|DR356201.1|DR356201
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060509|gb|DR356266.1|DR356266
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060481|gb|DR356238.1|DR356238
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|152035452|gb|BP853947.2|BP853947
EST:     CGCTCGTTTGGAGCAAACAGCCACTGTGGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTCCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: CGCTCGTTTGGAGCAAACAG-CACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060482|gb|DR356239.1|DR356239
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060440|gb|DR356197.1|DR356197
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060446|gb|DR356203.1|DR356203
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTTTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACNAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060512|gb|DR356269.1|DR356269
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060508|gb|DR356265.1|DR356265
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060464|gb|DR356221.1|DR356221
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060454|gb|DR356211.1|DR356211
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGNGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060453|gb|DR356210.1|DR356210
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060452|gb|DR356209.1|DR356209
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060498|gb|DR356255.1|DR356255
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060470|gb|DR356227.1|DR356227
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060456|gb|DR356213.1|DR356213
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060460|gb|DR356217.1|DR356217
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060474|gb|DR356231.1|DR356231
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060499|gb|DR356256.1|DR356256
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060485|gb|DR356242.1|DR356242
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060501|gb|DR356258.1|DR356258
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         N
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcag-
EST: gi|86060501|gb|DR356258.1|DR356258
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         N
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcag-
EST: gi|86060437|gb|DR356194.1|DR356194
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTNTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060483|gb|DR356240.1|DR356240
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060445|gb|DR356202.1|DR356202
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060461|gb|DR356218.1|DR356218
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060497|gb|DR356254.1|DR356254
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060434|gb|DR356191.1|DR356191
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060492|gb|DR356249.1|DR356249
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060505|gb|DR356262.1|DR356262
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060465|gb|DR356222.1|DR356222
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060475|gb|DR356232.1|DR356232
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060457|gb|DR356214.1|DR356214
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060466|gb|DR356223.1|DR356223
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGNGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060471|gb|DR356228.1|DR356228
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060486|gb|DR356243.1|DR356243
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060449|gb|DR356206.1|DR356206
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGNGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAAAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060438|gb|DR356195.1|DR356195
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060507|gb|DR356264.1|DR356264
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060473|gb|DR356230.1|DR356230
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060490|gb|DR356247.1|DR356247
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060462|gb|DR356219.1|DR356219
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060488|gb|DR356245.1|DR356245
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|47829411|gb|CK119095.1|CK119095
EST:     TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060467|gb|DR356224.1|DR356224
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060459|gb|DR356216.1|DR356216
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060450|gb|DR356207.1|DR356207
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|86060489|gb|DR356246.1|DR356246
EST:     TCGCTCGTTCGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT
EST: gi|125287690|gb|EL301775.1|EL301775
EST:     TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCG                         GATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGTCTACGAAGTTAGGAT
genomic: TCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTTGCGATCATCTTCTTCGgtgagtgatt ... tacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggtgtttttggttttgatagttttattgacgattgaaattttttacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGATCAGTTATTGGGATAGATCTTGGTACCACTTACTCTTGTGTTGGTGTTTA
                         tattgac  putative branch site (score: 2)
                                        ttttttac  putative PPT
             ttttgatagttttatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
catttcattgataatagagtgaaattaagttttgagattggttgattggtgtttttggttttgatagttttattgacgattgaaattttttacgattcagGATGTTTATTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGATCAGTTATTGGGATAGATCTTGGTACCACTTACTCTTGTGTTGGTGTTTA

- - - - - - - - - - - - - - gttttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ggttttg