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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgcttcctcttcttttaccccttagtaaatggtaaattagtctcattttgaatatcaaaataattatcctgatctcgttttgacagAGGAACCCCTCAAATCGAGGTCACATTTGAA

Basic information

species Arabidopsis thaliana
transcript AT5G42020.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125259684|gb|EL273769.1|EL273769
EST:     TGCAGGCTACTCGGGAAATTCGACCTCACTGGAGTCCCACCGGCCCCAAG                         AAGGAAACCCCTCAAATCGAGGTCACATTTGAA
genomic: TGCAGGCTACTCGGGAAATTCGACCTCACTGGAGTCCCACCGGCCCCAAGgtttgcttcc ... gttttgacagA-GGAA-CCCCTCAAATCGAGGTCACATTTGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaaattagtctcattttgaatatcaaaataattatcctgatctcgttttgacagAGGAACCCCTCAAATCGAGGTCACATTTGAA
                                   tcctgat  putative branch site (score: 3)
                                         tctcgtttt  CT-rich tract
         tctcattttgaatatc  TA-rich tract