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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatttctaagaggtttatcatggatagttgacttaattgttcctaacagttctctggcttagtgtgcaacctcctaactttttaatgtgttttgatatagGTCATGCATCTTGATGCTGAGAAGGAAATGATGTCACAGTGTGTTGCTCTTCTTGGCAAGTTTATTTCTGTCCGTGAGCCCAACATCAGATATCTAGGCT

Basic information

species Arabidopsis thaliana
transcript AT5G22770.2
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G22770.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: LOC_Os03g02150.1 (Oryza sativa), 3'ss of exon 8
----------------------------------------------------------------------tatttctaagaggtttat-catggatagttgacttaattgttcctaacagttc---tctggcttagtgtgcaacctcctaactttttaatgtgtttt--------------gatatagGTCATGCATCTTGATGCTGAGAAGGAAATGATGTCACAGTGTGTTGCTCTTCTTGGCAAGTTTATTTCTGTCCGTGAGCCCAACATCAGATATCTAGGCT
                                                                       |  |     |  |||||      | | ||  ||| || ||  | |    |||    ||||  ||   |  | | |   |    ||||   || ||                 ||||||| ||||||||||||||||| ||||| |||||||| ||||| || ||||||||||| ||||||||| | || || || || || || || ||||| ||  
gtgagttcaaacgaaaacttctactactatatattttaatttctagcaatttgtttctcaaccagttcctcaccttccctacttttatattcatacaattatcttcatggtctccagtgtttcaccactggagtaaaataaagcttatcacgcatttagaatgcttctctaagttctcccgattatagGTTATGCATCTTGATGCTGAAAAGGAGATGATGTCCCAGTGCGTGGCTCTTCTTGGGAAGTTTATTGCAGTTCGGGAACCAAATATTAGGTATCTTGGTC

upper sequence: AT5G22770.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GRMZM2G700148_T01 (Zea mays), 3'ss of exon 8
-----------------------------------tatttctaagaggtttatcatgga-tagttgacttaa--ttgttcctaacagttctctggcttagtgtgcaacctcctaact-------ttttaatgtgt----tttgatatagGTCATGCATCTTGATGCTGAGAAGGAAATGATGTCACAGTGTGTTGCTCTTCTTGGCAAGTTTATTTCTGTCCGTGAGCCCAACATCAGATATCTAGGCT
                                    |         | | |  ||| |  |  |   | |||  || | | |  ||        | || || | |   ||  ||| |       |||  |||| |     |  ||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| | ||||| ||||| |||||  | || || ||  
gtgagtttgtattgactttaaagcgattaatcccccaccctggtccgatcttgcattgccttttctgcataagtttatgcttcgcaaaatcacagtttggtatcctgtctattaattaagtctgtttgcatgtataatactccatatagGTCATGCATCTGGATGCTGAGAAGGAGATGATGTCACAGTGTGTGGCTCTTCTTGGGAAGTTTATTGCAGTCCGGGAGCCAAACATTCGGTACCTCGGTC

upper sequence: AT5G22770.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GRMZM2G137236_T01 (Zea mays), 3'ss of exon 9
tatttctaagaggtttatcatggatagttgacttaattgttcctaacagttctctggcttagtgtgcaacctcctaactttttaatgtgttttgatatagGTCATGCATCTTGATGCTGAGAAGGAAATGATGTCACAGTGTGTTGCTCTTCTTGGCAAGTTTATTTCTGTCCGTGAGCCCAACATCAGATATCTAGGCT
            |||| | |   ||  ||  |  ||||     |    ||    || |||  |    ||     |     | |||||    || ||||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||| ||||||||| | ||||| ||||| |||||  | || || ||  
--------gtgagtttgt-acttatgtttcgcaaaattacagtt--tggtatattgtctttttaattaagtctttgcacgtataatgc---ttcatatagGTCATGCATCTGGATGCTGAAAAGGAGATGATGTCACAGTGTGTGGCTCTTCTTGGGAAGTTTATTGCAGTCCGGGAGCCAAACATTCGGTACCTTGGTC

upper sequence: AT5G22770.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA12G30520.1 (Glycine max), 3'ss of exon 8
-----tatttctaagaggtttatcatggatagttgactta--attgttcctaacagttctctggcttagtgtgcaacctcctaactttttaatgtgttttgatatagGTCATGCATCTTGATGCTGAGAAGGAAATGATGTCACAGTGTGTTGCTCTTCTTGGCAAGTTTATTTCTGTCCGTGAGCCCAACATCAGATATCTAGGCT
     | | ||        || ||     |     ||     ||| || || ||| |    ||   |||| |  |  |||    ||  ||  | | ||       |||| ||||||||||||||||| || || |||||||| |||||||| ||||||||||| || |||||| |||||||||| || |||||  ||||||| ||||
gttaatctctccctcccccttctcccaatttacatacaggggattttttctcacaatgagatgttgtagt-tatactctctattctgattgctatattc------agGTGATGCATCTTGATGCTGAAAAAGAGATGATGTCTCAGTGTGTGGCTCTTCTTGGAAAATTTATTGCTGTCCGTGAACCAAACATTCGATATCTTGGCT

upper sequence: AT5G22770.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA17G05410.1 (Glycine max), 3'ss of exon 8
tatttctaagaggtttatcatggatagttgacttaattgttcctaacagttctctggcttagtgtgcaacctcctaactttttaatgtg-ttttgatat--agGTCATGCATCTTGATGCTGAGAAGGAAATGATGTCACAGTGTGTTGCTCTTCTTGGCAAGTTTATTTCTGTCCGTGAGCCCAACATCAGATATCTAGGCT
 |||                     | || || ||   |    |     | |||    | ||  || | |      ||| | || | || ||   ||||  |||| ||||||||||||||||| || || |||||||| || ||||| ||||||||||| || |||||| |||||||||| || |||||  ||||||| ||||
-attctctccctccccccttctcccaatttacatacaagggatttttt-tcctcacaatcag-atgtagcagttatactctctattctgattgctatattcagGTGATGCATCTTGATGCTGAAAAAGAGATGATGTCTCAATGTGTGGCTCTTCTTGGAAAATTTATTGCTGTCCGTGAACCAAACATTCGATATCTTGGCT

upper sequence: AT5G22770.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv06s0061g01170.t01 (Vitis vinifera), 3'ss of exon 8
-----tatttctaagaggtttatcatggatagttgacttaattgttcctaacagttctctggcttagtgtgcaacctcctaactttttaatgtgttttgatatagGTCATGCATCTTGATGCTGAGAAGGAAATGATGTCACAGTGTGTTGCTCTTCTTGGCAAGTTTATTTCTGTCCGTGAGCCCAACATCAGATATCTAGGCT
       ||||       || |   ||| |  || |  || | |||  ||  ||   |  ||   ||  |  |      |   |  || |  |    ||  | ||||||||||||| |||||||| || ||||||||||| || ||||||||  | ||||| || |||||| |||| || ||||| || ||  ||||||| || |
gttgggttttcctcttatttcaatgtgggt--ttaagatactggtttttatgagaattaagg---agcttttatgtggttgtgtccttcaattaccctggcacagGTCATGCATCTGGATGCTGAAAAAGAAATGATGTCTCAATGTGTTGCCTTGCTTGGGAAATTTATTGCTGTACGAGAGCCAAATATACGATATCTTGGTT

upper sequence: AT5G22770.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: EFJ34224 (Selaginella moellendorffii), 3'ss of exon 8
tatttctaagaggtttatcatggatagttgacttaattgttcctaacagttctctggcttagt-gtgcaacctcctaactttttaatgtgttttgatatagGTCATGCATCTTGATGCTGAGAAGGAAATGATGTCACAGTGTGTTGCTCTTCTTGGCAAGTTTATTTCTGTCCGTGAGCCCAACATCAGATATCTAGGCT
                                           ||    || |||   |  || || | |      | | ||||    | || |     |||| |||||| | || || ||||| || |||||| |||| ||||||| ||| ||||| ||||||||| |||||||||||||||||||  ||||||| ||  
------------------------------------------gtaggttttttctttttctgttgttccattcaagagcctttt----ttttgtcgcgcagGTGATGCATTTAGACGCAGAGAAAGATATGATGGCACAATGTGTTGGTCTACTTGGAAAGTTTATTGCTGTCCGTGAGCCCAACATTCGATATCTTGGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acagttctctggcttagtgtgcaacctcctaactttttaatgtgttttgatatagGTCATGCATCTTGATGCTGAGAAGGAAATGATGTCACAGTGTGTTGCTCTTCTTGGCAAGTTTATTTCTGTCCGTGAGCCCAACATCAGATATCTAGGCT
                                 tttttaatgtgttttg  TA-rich tract