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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggacaacacaaatgttgaattgcgctcttctcgtctttgggtatgtcttaatagctttttttcgttttttttctcagGACTCCCACCATTCCTATTCTTCTTTCCACATATGCAAAGCTTCTTATGCACGCTCAACCCCCGGATCCAGAACTGCAAAAAAAAGTTTGGGCTGTATTT

Basic information

species Arabidopsis thaliana
transcript AT5G22770.2
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G22770.2 (Arabidopsis thaliana), 3'ss of exon 16
lower sequence: Vv06s0061g01170.t01 (Vitis vinifera), 3'ss of exon 15
gtaaggacaacacaaatgttgaattgcgctcttctcgtctttgggtatgtcttaa----tagcttttt----ttcgtttttt-ttctcagGACTCCCACCATTCCTATTCTTCTTTCCACATATGCAAAGCTTCTTATGCACGCTCAACCCCCGGATCCAGAACTGCAAAAAAAAGTTTGGGCTGTATTT
|||||  |  |  |    |  |  ||   |||| || | |  |       ||| |    |||  | ||      | | || |  | |||||||| | ||  |||||||||||||||| |||||||| ||| || | |||||| |||||||| | || |||||||| || ||  |  |||||||  |||| 
gtaagagct-cttagccttgcatctgttgtcttttcttatacgttctgcccttcaatcctaggatcttaaaacacatattgtactttcagGACTTCTACAGTTCCTATTCTTCTTTCAACATATGCTAAGATTTTGATGCACACTCAACCCTCAGACCCAGAACTACAGAATCAGATTTGGGCAATATTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164166571|gb|ES207509.1|ES207509
EST:     AGTGCAAGTGAACTCTTTAGCATCTTACATGAGAAGCTTCCTAAAATATC                         GACTCCCACCATTCCTA
genomic: AGTGCAAGTGAACTCTTTAGCATCTTACATGAGAAGCTTCCTACAATATCgtaaggacaa ... tttttctcagGACTCCCACCATTCCTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgctcttctcgtctttgggtatgtcttaatagctttttttcgttttttttctcagGACTCCCACCATTCCTATTCTTCTTTCCACATATGCAAAGCTTCTTATGCACGCTCAACCCCCGGATCCAGAACTGCAAAAAAAAGTTTGGGCTGTATTT
                       tcttaat  putative branch site (score: 3)
                             tagctttttttcgttt  CT-rich tract
                                 tttttttcgttttttt  TA-rich tract