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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGCATCTTGATGCTGAGAAGGAAATGATGTCACAGTGTGTTGCTCTTCTTGGCAAGTTTATTTCTGTCCGTGAGCCCAACATCAGATATCTAGGCTTGgtgagatcttgcataccacttcctgcatctaagcctagctggagtagtttgtgaagtggttggtggtttctcatgatgcattttttgacaaaattacag

Basic information

species Arabidopsis thaliana
transcript AT5G22770.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G22770.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: LOC_Os03g02150.1 (Oryza sativa), 5'ss of exon 9
CATGCATCTTGATGCTGAGAAGGAAATGATGTCACAGTGTGTTGCTCTTCTTGGCAAGTTTATTTCTGTCCGTGAGCCCAACATCAGATATCTAGGCTTGgtgag----atcttgca----taccacttcctgcatctaagcctagctgg--agtagtttgtgaagtggttggtg---gtttctcatg----atgcattttttgacaaaattacag------------------------------------------------------
 ||||||||||||||||| ||||| |||||||| ||||| || ||||||||||| ||||||||| | || || || || || || || ||||| ||  |||| ||    |  |||||    ||  |||   ||  ||||    |   |     ||| |||| | | || || ||     || || ||     ||  ||  ||       |||| |                                                       
TATGCATCTTGATGCTGAAAAGGAGATGATGTCCCAGTGCGTGGCTCTTCTTGGGAAGTTTATTGCAGTTCGGGAACCAAATATTAGGTATCTTGGTCTGgtaagttgtactttgcaacagtaatactgtttgattctatatatgtttttttggtactttg-gtaatgtttcgttcacattcctgatagtctataaatgcttcattcgcattaaatccccgtgagtgaaaactttgccataatgtgatggtatttcatctgtcttcacag

upper sequence: AT5G22770.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM2G700148_T01 (Zea mays), 5'ss of exon 9
CATGCATCTTGATGCTGAGAAGGAAATGATGTCACAGTGTGTTGCTCTTCTTGGCAAGTTTATTTCTGTCCGTGAGCCCAACATCAGATATCTAGGCTTGgtgag-atcttgcataccacttcctgcatc-taagcctagctggag---tagtttgtgaagtggttggtggtttctcatgatgcatt-ttttgacaaaattacag-------------
||||||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| | ||||| ||||| |||||  | || || ||  |||| |     || | ||  | |   | | |  |     | |||||     | | ||  | |     | |||       |  ||  |   | |||| | | | |  |             
CATGCATCTGGATGCTGAGAAGGAGATGATGTCACAGTGTGTGGCTCTTCTTGGGAAGTTTATTGCAGTCCGGGAGCCAAACATTCGGTACCTCGGTCTGgtaattgcatttcttattaatatttacttaatgccttttgctggcagtcttgcttccgcatcaagttgtgcaagtgtaaaatctaccatattgagacagtaatcgatccatctttcag

upper sequence: AT5G22770.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM2G137236_T01 (Zea mays), 5'ss of exon 10
CATGCATCTTGATGCTGAGAAGGAAATGATGTCACAGTGTGTTGCTCTTCTTGGCAAGTTTATTTCTGTCCGTGAGCCCAACATCAGATATCTAGGCTTGgtga---gatcttgcat-accacttcctgcatctaagccta--gctggag---tagtttgtgaagtggttggtggtttctcatgatgcatt-ttttgacaaaattacag-------------
||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||| ||||||||| | ||||| ||||| |||||  | || || ||  |||| |    || |   || |    || ||  ||  |  |||   |||||     | | ||    |     | |||       |  ||  ||  | |||| | | | |  |             
CATGCATCTGGATGCTGAAAAGGAGATGATGTCACAGTGTGTGGCTCTTCTTGGGAAGTTTATTGCAGTCCGGGAGCCAAACATTCGGTACCTTGGTCTGgtaattgcatttcttattaatgtttacttgattaacaccttttgctggcagtcttgctttcacatcaagttgtgcaagtgtacaatttatcatattgaaacagtaatcgatccatctttcag

upper sequence: AT5G22770.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA12G30520.1 (Glycine max), 5'ss of exon 9
CATGCATCTTGATGCTGAGAAGGAAATGATGTCACAGTGTGTTGCTCTTCTTGGCAAGTTTATTTCTGTCCGTGAGCCCAACATCAGATATCTAGGCTTGgtgagatcttgcataccacttcctgcatctaagcctagctggagtagtttgtgaagtggttggtggtttctcatgatgcattttttgacaaa-attacag--
 ||||||||||||||||| || || |||||||| |||||||| ||||||||||| || |||||| |||||||||| || |||||  ||||||| |||||||| || |   |   || ||||  |  ||||     |  ||    | |||| |    |  ||  |  |||    |  || |      | |||  ||| ||   
GATGCATCTTGATGCTGAAAAAGAGATGATGTCTCAGTGTGTGGCTCTTCTTGGAAAATTTATTGCTGTCCGTGAACCAAACATTCGATATCTTGGCTTGgtaagttggggggcac-acttgattaatctgtatttctcttttcttgtttttttttttttttttttttttctgtt-tgaagggaggggcaaggattgcatgc

upper sequence: AT5G22770.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA17G05410.1 (Glycine max), 5'ss of exon 9
CATGCATCTTGATGCTGAGAAGGAAATGATGTCACAGTGTGTTGCTCTTCTTGGCAAGTTTATTTCTGTCCGTGAGCCCAACATCAGATATCTAGGCTTGgtgagatcttg--catacc-----acttcctgcatctaagc-ctagctggagtagtt---tgtgaagtggttggtggtttctcatgatgcattttttgacaaaattacag-----------------------------------------------------------------------------------
 ||||||||||||||||| || || |||||||| || ||||| ||||||||||| || |||||| |||||||||| || |||||  ||||||| |||||||| ||     |  |||||      | | | |   |||     || | |    || ||   | |||||  |      |  |  ||||    |||| |  |  | ||| ||                                                                                    
GATGCATCTTGATGCTGAAAAAGAGATGATGTCTCAATGTGTGGCTCTTCTTGGAAAATTTATTGCTGTCCGTGAACCAAACATTCGATATCTTGGCTTGgtaagtcggggggcatacttgattaatccatatttctcttttcttgttcttttatttctgtttgaaggagggacaaggattgcatgcccaatttctgcagtagatttcattatcatagtagaaggcttggtggtggtggtggttgtcataatgcaatgtcccagttcataacatatatgctattatggtgcag

upper sequence: AT5G22770.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv06s0061g01170.t01 (Vitis vinifera), 5'ss of exon 9
CATGCATCTTGATGCTGAGAAGGAAATGATGTCACAGTGTGTTGCTCTTCTTGGCAAGTTTATTTCTGTCCGTGAGCCCAACATCAGATATCTAGGCTTGgtgagatcttgcataccacttcctgcatctaagcctagctggagtagtttgtgaagtggttggtggtttctca--tgatgcattttttgacaaaattacag---------------------------------------------------------------
||||||||| |||||||| || ||||||||||| || ||||||||  | ||||| || |||||| |||| || ||||| || ||  ||||||| || ||||| || |   | ||    ||  |||    |  |    |         | | |  | || ||   |  |    |  ||          ||  | ||||  |                                                                
CATGCATCTGGATGCTGAAAAAGAAATGATGTCTCAATGTGTTGCCTTGCTTGGGAAATTTATTGCTGTACGAGAGCCAAATATACGATATCTTGGTTTGgtaagttacaggatggttctatctgtgcttccgttatgtcttcacc-tatatccaatgattaaagcatatcaaactggcatgcaccatgttagaatttgaatggattgatgtcattgcttgctgtctaactgcatgatttgacatttagattactctgctgcag

upper sequence: AT5G22770.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: EFJ34224 (Selaginella moellendorffii), 5'ss of exon 9
CATGCATCTTGATGCTGAGAAGGAAATGATGTCACAGTGTGTTGCTCTTCTTGGCAAGTTTATTTCTGTCCGTGAGCCCAACATCAGATATCTAGGCTTGgtgagatcttgcataccacttcctgcatctaagcctagctggagtagtttgtgaagtggttggtggtttctcatgatgcattttttgacaaaattacag
 |||||| | || || ||||| || |||||| |||| ||||||| ||| ||||| ||||||||| |||||||||||||||||||  ||||||| ||  ||||  |    |   |  |    | | |  |||  | |  |     |  |   || ||                                           
GATGCATTTAGACGCAGAGAAAGATATGATGGCACAATGTGTTGGTCTACTTGGAAAGTTTATTGCTGTCCGTGAGCCCAACATTCGATATCTTGGACTGgtatggatatttgtggc----cttacg-ctatactttaccttgtttttcactgcag-------------------------------------------

upper sequence: AT5G22770.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: EFJ21842 (Selaginella moellendorffii), 5'ss of exon 9
CATGCATCTTGATGCTGAGAAGGAAATGATGTCACAGTGTGTTGCTCTTCTTGGCAAGTTTATTTCTGTCCGTGAGCCCAACATCAGATATCTAGGCTTGgtgagatcttgcataccacttcctgcatctaagcctagctggagtagtttgtgaagtggttggtggtttctcatgatgcattttttgacaaaattacag
 |||||| | || || ||||| || |||||| |||| ||||||| ||| ||||| ||||||||| |||||||||||||||||||  ||||||| ||  ||||  |    |   |  |    ||| |  |||  | |  |     |  |   || ||                                           
GATGCATTTAGACGCAGAGAAAGATATGATGGCACAATGTGTTGGTCTACTTGGAAAGTTTATTGCTGTCCGTGAGCCCAACATTCGATATCTTGGACTGgtatggatatttgtggc----cctacg-ctatactttaccttgtttttcactgcag-------------------------------------------