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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCAAGGGGCTTATGTCATTTCCTCTTGACGGAAACAACTCTACgtaataaattttctatgtttgacatttataaactagtaaattataacaaagttgtttcacaagatttactttttaggagaaatggtaacaaagtgtttttgtgggtagttataatgatatgtttactttaattgcag

Basic information

species Arabidopsis thaliana
transcript AT5G14740.4
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G14740.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv14s0066g01210.t01 (Vitis vinifera), 5'ss of exon 7
GTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCAAGGGGCTTATGTCATTTCCTCTTGACGGAAACAACTCTACgtaataaattttctatgtttgacatttataaactagtaaattataacaaagttgtttcacaagatttactttttaggagaaatggtaacaaagtgtttttgtgggtagttataatgatatgtttactttaattgcag
|||||  |||| ||||| || || |||||    |||||||| ||||||||||| |||||||||||  |||| ||||  | ||||||||||    || ||      | |||    | || || |   | |   | || |||      |||  | |   |  |  ||| | | |||    |   |||| ||       ||  |                      
GTGGAGCACATAGTGGTCATTGGTCACAGCAGCTGTGGTGGAATCAAGGGGCTCATGTCATTTCCCTTTGATGGAACAAGCTCTACgtaaggccttatc-----atcacacaactcaattactttttcaatgctaatttg------aagtatcatagtagattagagaggctaa----gcaattttatgtcacccaatgct----------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124829918|gb|EH914484.1|EH914484
EST:     ACGGAAACAACTCTAC                         TGACTTCATAGAGGATTGGGTCAAAATCTGTTTACCAGCAAAGTCAAAAGT
genomic: ACGGAAACAACTCTACgtaataaatt ... ttaattgcagTGACTTCATAGAGGATTGGGTCAAAATCTGTTTACCAGCAAAGTCAAAAGT
EST: gi|125285072|gb|EL299157.1|EL299157
EST:     AACAACTCTAC                         TGACTTCATAGAGGATTGGGTCAAAATCTGTTTACCAGCAAAGTCAAAAGT
genomic: AACAACTCTACgtaataaatt ... ttaattgcagTGACTTCATAGAGGATTGGGTCAAAATCTGTTTACCAGCAAAGTCAAAAGT
EST: gi|125255874|gb|EL269959.1|EL269959
EST:     GGTGGCATCAAGGGGCTTATGTCATTTCCTCTTGACGGAAACAACTCTAC                         TGACTTCATAGAGGATTGGGTCAAAATCTGTTTACCAG
genomic: GGTGGCATCAAGGGGCTTATGTCATTTCCTCTTGACGGAAACAACTCTACgtaataaatt ... ttaattgcagTGACTTCATAGAGGATTGGGTCAAAATCTGTTTACCAG
EST: gi|124998299|gb|EL070568.1|EL070568
EST:     ACGGAAACAACTCTAC                         TGACTTCATAGAGGATTGGGTCAAAATCTGTTTACCAGCAAAGTCAAAAGT
genomic: ACGGAAACAACTCTACgtaataaatt ... ttaattgcagTGACTTCATAGAGGATTGGGTCAAAATCTGTTTACCAGCAAAGTCAAAAGT
EST: gi|124958986|gb|EL033693.1|EL033693
EST:     CCTCTTGACGGAAACAACTCTAC                         TGACTTCATAGAGGATTGGGTCAAAATCTGTTTACCAGCAAAGTCAAAAGT
genomic: CCTCTTGACGGAAACAACTCTACgtaataaatt ... ttaattgcagTGACTTCATAGAGGATTGGGTCAAAATCTGTTTACCAGCAAAGTCAAAAGT
EST: gi|124761614|gb|EH851744.1|EH851744
EST:     GGTGGCATCAAGGGGCTTATGTCATTTCCTCTTGACGGAAACAACTCTAC                         TGACTTCATAGAGGATTGGGTCAAAATCTGTTTACCAGCAAA
genomic: GGTGGCATCAAGGGGCTTATGTCATTTCCTCTTGACGGAAACAACTCTACgtaataaatt ... ttaattgcagTGACTTCATAGAGGATTGGGTCAAAATCTGTTTACCAGCAAA
EST: gi|124815030|gb|EH899896.1|EH899896
EST:     TGTCATTTCCTCTTGACGGAAACAACTCTAC                         TGACTTCATAGAGGATTGGGTCAAAATCTGTTTACCAGCAAAGTCAAAAGT
genomic: TGTCATTTCCTCTTGACGGAAACAACTCTACgtaataaatt ... ttaattgcagTGACTTCATAGAGGATTGGGTCAAAATCTGTTTACCAGCAAAGTCAAAAGT
EST: gi|124812988|gb|EH897854.1|EH897854
EST:     AAGGGGCTTATGTCATTTCCTCTTGACGGAAACTAACTCTAC                         TGACTTCATAGAGGATTGGGTCAAAATCTGTTTACCAGCAAAGTCAAAAG
genomic: AAGGGGCTTATGTCATTTCCTCTTGACGGAAAC-AACTCTACgtaataaatt ... ttaattgcagTGACTTCATAGAGGATTGGGTCAAAATCTGTTTACCAGCAAAGTCAAAAG
EST: gi|125271232|gb|EL285317.1|EL285317
EST:     TCAAGGGGCTTATGTCATTTCCTCTTGACGGAAACAACTCTAC                         TGACTTCATAGAGGATTGGGTCAAAATCTGTTTACCAGCAAAGTCAAAAGT
genomic: TCAAGGGGCTTATGTCATTTCCTCTTGACGGAAACAACTCTACgtaataaatt ... ttaattgcagTGACTTCATAGAGGATTGGGTCAAAATCTGTTTACCAGCAAAGTCAAAAGT
EST: gi|124968643|gb|EL042586.1|EL042586
EST:     GGTGGCATCAAGGGGCTTATGTCATTTCCTCTTGACGGAAACAACTCTAC                         TGACTTCATAGAGGAATTAGGGTCAAAATCTGTTTACCAGCAAAGTCAAAA
genomic: GGTGGCATCAAGGGGCTTATGTCATTTCCTCTTGACGGAAACAACTCTACgtaataaatt ... ttaattgcagTGACTTCATAGAGGA-TT-GGGTCAAAATCTGTTTACCAGCAAAGTCAAAA
EST: gi|125219271|gb|EL233356.1|EL233356
EST:     GGTGGCATCAAGGGGCTTATGTCATTTCCTCTTGACGGAAACAACTCTAC                         TGACTTCATAG
genomic: GGTGGCATCAAGGGGCTTATGTCATTTCCTCTTGACGGAAACAACTCTACgtaataaatt ... ttaattgcagTGACTTCATAG
EST: gi|125275432|gb|EL289517.1|EL289517
EST:     GGTGGCATCAAGGGGCTTATGTCATTTCCTCTTGACGGAAACAACTCTAC                         TGACTTCATAGAAGATTGGGTCAAAATCTGTTTACCAGCAAAG
genomic: GGTGGCATCAAGGGGCTTATGTCATTTCCTCTTGACGGAAACAACTCTACgtaataaatt ... ttaattgcagTGACTTCATAGAGGATTGGGTCAAAATCTGTTTACCAGCAAAG
EST: gi|124912085|gb|EH986165.1|EH986165
EST:     TTCCTCTTGACGGAAACAACTCTAC                         TGACTTCATAGAGGATTGGGTCAAAATCTGTTTACCAGCAAAGTCAAAAGT
genomic: TTCCTCTTGACGGAAACAACTCTACgtaataaatt ... ttaattgcagTGACTTCATAGAGGATTGGGTCAAAATCTGTTTACCAGCAAAGTCAAAAGT
EST: gi|124877183|gb|EH956620.1|EH956620
EST:     TTTCCTCTTGACAGAAACAACTCTAC                         TGACTTCATAGAGGATTGGGTCAAAATCTGTTTACCAGCAAAGTCAAAAGT
genomic: TTTCCTCTTGACGGAAACAACTCTACgtaataaatt ... ttaattgcagTGACTTCATAGAGGATTGGGTCAAAATCTGTTTACCAGCAAAGTCAAAAGT
EST: gi|124993431|gb|EL065700.1|EL065700
EST:     GGTGGCATCAAGGGGCTTATGTCGTTTCCTCTTGACGGAAACAACTCTAC                         TGACTTCATAGAGGA
genomic: GGTGGCATCAAGGGGCTTATGTCATTTCCTCTTGACGGAAACAACTCTACgtaataaatt ... ttaattgcagTGACTTCATAGAGGA
EST: gi|124998816|gb|EL071085.1|EL071085
EST:     GGTGGCATCAAGGGGCTTATGTCATTTCCTCTTGACGGAAACAACTCTAC                         TGACTTCATAGAGGATTGGGTCAAAATCTGTTTACCAGCAAAGTCAAAAGT
genomic: GGTGGCATCAAGGGGCTTATGTCATTTCCTCTTGACGGAAACAACTCTACgtaataaatt ... ttaattgcagTGACTTCATAGAGGATTGGGTCAAAATCTGTTTACCAGCAAAGTCAAAAGT
EST: gi|124851353|gb|EH935790.1|EH935790
EST:     GGTGGCATCAAGGGGCTTATGTCATTTCCTCTTGACGGAAACAACTCTAC                         TGACTTCATAGAGGATTGGGTCAAAATCTGTTTACCAG
genomic: GGTGGCATCAAGGGGCTTATGTCATTTCCTCTTGACGGAAACAACTCTACgtaataaatt ... ttaattgcagTGACTTCATAGAGGATTGGGTCAAAATCTGTTTACCAG
EST: gi|125276281|gb|EL290366.1|EL290366
EST:     TTTCCTCTTGACGGAAACAACTCTAC                         TGACTTCATAGAGGATTGGGTCAAAATCTGTTTACCAGCAAAGTACAAAAG
genomic: TTTCCTCTTGACGGAAACAACTCTACgtaataaatt ... ttaattgcagTGACTTCATAGAGGATTGGGTCAAAATCTGTTTACCAGCAAAGT-CAAAAG
EST: gi|125220805|gb|EL234890.1|EL234890
EST:     GGTGGCATCAAGGGGCTTATGTCATTTCCTCTTGACGGAAACAACTCTAC                         TGACTTCATAG
genomic: GGTGGCATCAAGGGGCTTATGTCATTTCCTCTTGACGGAAACAACTCTACgtaataaatt ... ttaattgcagTGACTTCATAG
EST: gi|125109033|gb|EL161681.1|EL161681
EST:     AAGGGGCTTATGTCATTTCCTCTTGACGGAAACAACTCTAC                         TGACTTCATAGAGGATTGGGTCAAAATCTGTTTACCAGCAAAGTCAAAAGT
genomic: AAGGGGCTTATGTCATTTCCTCTTGACGGAAACAACTCTACgtaataaatt ... ttaattgcagTGACTTCATAGAGGATTGGGTCAAAATCTGTTTACCAGCAAAGTCAAAAGT