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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAAATATGCAGGAGTTGGAGCCGCCATTGAATACGCTGTCTTGCACCTTAAGgtcaaaatctctccctcaataatcaatatatacattcttctctctttagattgttttgtgttttttcctaaaacttgcttgactcataggatgcatgtta...

Basic information

species Arabidopsis thaliana
transcript AT5G14740.4
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125324179|gb|EL338259.1|EL338259
EST:     CAGGAGTTGGAGCCGCCATTGAATACGCTGTCTTGCACCTTAAG                         GTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCAAGGGG
genomic: CAGGAGTTGGAGCCGCCATTGAATACGCTGTCTTGCACCTTAAGgtcaaaatct ... atgaatgtagGTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCAAGGGG
EST: gi|125188167|gb|EL203121.1|EL203121
EST:     TACGCTGTCTTGCACCTTAAG                         GTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCAAGGGG
genomic: TACGCTGTCTTGCACCTTAAGgtcaaaatct ... atgaatgtagGTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCAAGGGG
EST: gi|125320088|gb|EL334173.1|EL334173
EST:     TCTTGCACCTTAAG                         GTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCAAGGGG
genomic: TCTTGCACCTTAAGgtcaaaatct ... atgaatgtagGTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCAAGGGG
EST: gi|124891157|gb|EH970059.1|EH970059
EST:     AATACGCAGGAGTTGGAGCCGCCATTGAATACGCTGTCTTGCACCTTAAG                         GTAGGAAAACATTGTGGTGATAGGGCACAG
genomic: AATATGCAGGAGTTGGAGCCGCCATTGAATACGCTGTCTTGCACCTTAAGgtcaaaatct ... atgaatgtagGT-GGAAAACATTGTGGTGATAGGGCACAG
EST: gi|125060843|gb|EL129520.1|EL129520
EST:     AGTTGGAGCCGCCATTGAATACGCTGTCTTGCACCTTAAG                         GTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCAA
genomic: AGTTGGAGCCGCCATTGAATACGCTGTCTTGCACCTTAAGgtcaaaatct ... atgaatgtagGTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCAA
EST: gi|47828530|gb|CK118214.1|CK118214
EST:     AATATGCAGGAGTTGGAGCCGCCATTGAATACGCTGTCTTGCACCTTAAG                         GTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCAAGGGG
genomic: AATATGCAGGAGTTGGAGCCGCCATTGAATACGCTGTCTTGCACCTTAAGgtcaaaatct ... atgaatgtagGTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCAAGGGG
EST: gi|124769564|gb|EH859694.1|EH859694
EST:     ACGCTGTCTTGCACCTTAAG                         GTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCAAGGGG
genomic: ACGCTGTCTTGCACCTTAAGgtcaaaatct ... atgaatgtagGTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCAAGGGG
EST: gi|125024648|gb|EL096917.1|EL096917
EST:     AATATGCAGGAGTTGGAGCCGCCATTGAATACGCTGTCTTGCACCTTAAG                         GTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGT
genomic: AATATGCAGGAGTTGGAGCCGCCATTGAATACGCTGTCTTGCACCTTAAGgtcaaaatct ... atgaatgtagGTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGT
EST: gi|124971641|gb|EL045387.1|EL045387
EST:     GGAGTTGGAGCCGCCATTGAATACGCTGTCTTGCACCTTAAG                         GTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCAAGGGG
genomic: GGAGTTGGAGCCGCCATTGAATACGCTGTCTTGCACCTTAAGgtcaaaatct ... atgaatgtagGTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCAAGGGG
EST: gi|125155133|gb|EL185412.1|EL185412
EST:     TCTTGCACCTTAAG                         GTGGAAAACATTGTGGTGTATAGGGCACAGTGCATGTGGTGGCATCAAGGG
genomic: TCTTGCACCTTAAGgtcaaaatct ... atgaatgtagGTGGAAAACATTGTGGTG-ATAGGGCACAGTGCATGTGGTGGCATCAAGGG
EST: gi|124952464|gb|EL027732.1|EL027732
EST:     TGAATACGCTGTCTTGCACCTTAAG                         GTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGG
genomic: TGAATACGCTGTCTTGCACCTTAAGgtcaaaatct ... atgaatgtagGTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGG
EST: gi|125151480|gb|EL183590.1|EL183590
EST:     GTCTTGCACCTTAAG                         GTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCAAGGGG
genomic: GTCTTGCACCTTAAGgtcaaaatct ... atgaatgtagGTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCAAGGGG
EST: gi|124905826|gb|EH979906.1|EH979906
EST:     GAATACGCTGTCTTGCACCTTAAG                         GTGGAAAACATTGTGGTGATAGGGCGCAGTGCATGTGGTGGCAT
genomic: GAATACGCTGTCTTGCACCTTAAGgtcaaaatct ... atgaatgtagGTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCAT
EST: gi|125202054|gb|EL217008.1|EL217008
EST:     GAATACGCTGTCTTGCACCTTAAG                         GTGGAAAACTATTGTGGTGATAGGGCACAGAGCATGTGGTGGCATCAAGGG
genomic: GAATACGCTGTCTTGCACCTTAAGgtcaaaatct ... atgaatgtagGTGGAAAAC-ATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCAAGGG
EST: gi|125002035|gb|EL074304.1|EL074304
EST:     AATATGCAGGAGTTGGAG-CGCCATTGAATACGCTGTCTTGCACCTTAAG                         GTGGAAAACATTGTGGTGATAGGGCACAGTGCAT
genomic: AATATGCAGGAGTTGGAGCCGCCATTGAATACGCTGTCTTGCACCTTAAGgtcaaaatct ... atgaatgtagGTGGAAAACATTGTGGTGATAGGGCACAGTGCAT
EST: gi|124962464|gb|EL036886.1|EL036886
EST:     AATATGCAGGAGTTGGAGCCGCCATTGAATACGCTGTCTTGCACCTTAAG                         GTGGAAAACATTGTGGTGATAGGGCAC
genomic: AATATGCAGGAGTTGGAGCCGCCATTGAATACGCTGTCTTGCACCTTAAGgtcaaaatct ... atgaatgtagGTGGAAAACATTGTGGTGATAGGGCAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCAAATATGCAGGAGTTGGAGCCGCCATTGAATACGCTGTCTTGCACCTTAAGgtcaaaatctctccctcaataatcaatatatacattcttctctctttagattgttttgtgttttttcctaaaacttgcttgactcataggatgcatgtta

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