1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagtaaaatattgaagatattggaaacttatagaagacttttgtaaactgagagactgattacatatactagtaattgaaaattaataggatttttaaaaattgaattttatatcacaaaaatatacgagcagTGAGAAGGATGATCTGAAGGATGTAGCTGCGGCCAAGGTGAAGAAGATCACGGCGGAGCTTCAGGCAGCCTCGTCATCGGACAGCAAATCTTTTGATCCC
species | Arabidopsis thaliana |
transcript | AT5G14740.4 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGAAACGAATCATATGAAGACGCCATCGAAGCTCTCAAGAAGCTTCTCAT TGAGAAGGATGATCTGAAGGATGTAGCTGGGGCCAAGGTGAAGAAGATCACEST: gi|124735721|gb|EH827123.1|EH827123
genomic: GGAAACGAATCATATGAAGACGCCATCGAAGCTCTCAAGAAGCTTCTCATgtaagtaaaa ... atacgagcagTGAGAAGGATGATCTGAAGGATGTAGCTGCGGCCAAGGTGAAGAAGATCAC
EST: CTCTCAAGAAGCTTCTCAT TGAGAAGGATGATCTGAAGGATGTAGCTGCGGCCAAGGTGAAGAAGATCACEST: gi|152035330|gb|BP850738.2|BP850738
genomic: CTCTCAAGAAGCTTCTCATgtaagtaaaa ... atacgagcagTGAGAAGGATGATCTGAAGGATGTAGCTGCGGCCAAGGTGAAGAAGATCAC
EST: GGAAACGAATCATATGAAGACGCCATCGAAGCTCTCAAGAAGCTTCTCAT TGAGAAGGATGATGTGAAGGATGTAGCTGCGGCCAAGGTGAAGAAGATCACEST: gi|47828530|gb|CK118214.1|CK118214
genomic: GGAAACGAATCATATGAAGACGCCATCGAAGCTCTCAAGAAGCTTCTCATgtaagtaaaa ... atacgagcagTGAGAAGGATGATCTGAAGGATGTAGCTGCGGCCAAGGTGAAGAAGATCAC
EST: GGAAACGAATCATATGAAGACGCCATCGAAGCTCTCAAGAAGCTTCTCAT TGAGAAGGATGATCTGAAGGATGTAGCTGCGGCCAAGGTGAAGAAGATCACEST: gi|124964523|gb|EL038778.1|EL038778
genomic: GGAAACGAATCATATGAAGACGCCATCGAAGCTCTCAAGAAGCTTCTCATgtaagtaaaa ... atacgagcagTGAGAAGGATGATCTGAAGGATGTAGCTGCGGCCAAGGTGAAGAAGATCAC
EST: TATGAAGACGCCATCGAAGCTCTCAAGAAGCTTCTCAT TGAGAAGGATGATCTGAAGGAEST: gi|125142871|gb|EL179894.1|EL179894
genomic: TATGAAGACGCCATCGAAGCTCTCAAGAAGCTTCTCATgtaagtaaaa ... atacgagcagTGAGAAGGATGATCTGAAGGA
EST: GGAAACGAATCATATGAAGACGCCATCGAAGCTCTCAAGAAGCTTCTCAT TGAGAAGGATGATCTGAAGGATGTAGCTGCGGCCAAGEST: gi|124727489|gb|EH818891.1|EH818891
genomic: GGAAACGAATCATATGAAGACGCCATCGAAGCTCTCAAGAAGCTTCTCATgtaagtaaaa ... atacgagcagTGAGAAGGATGATCTGAAGGATGTAGCTGCGGCCAAG
EST: CATATGAAGACGCCATCGAAGCTCTCAAGAAGCTTCTCAT TGAGAAGGATGATEST: gi|124737490|gb|EH828892.1|EH828892
genomic: CATATGAAGACGCCATCGAAGCTCTCAAGAAGCTTCTCATgtaagtaaaa ... atacgagcagTGAGAAGGATGAT
EST: CGCCATCGAAGCTCTCAAGAAGCTTCTCAT TGAGAAGGATGATCTGAAGGATGTAG
genomic: CGCCATCGAAGCTCTCAAGAAGCTTCTCATgtaagtaaaa ... atacgagcagTGAGAAGGATGATCTGAAGGATGTAG
aaaattaataggatttttaaaaattgaattttatatcacaaaaatatacgagcagTGAGAAGGATGATCTGAAGGATGTAGCTGCGGCCAAGGTGAAGAAGATCACGGCGGAGCTTCAGGCAGCCTCGTCATCGGACAGCAAATCTTTTGATCCC
aattaat putative branch site (score: 3)
taataggatttttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaaaatattgaagatattggaaacttatagaagacttttgtaaactgagagactgattacatatactagtaattgaaaattaataggatttttaaaaattgaattttatatcacaaaaatatacgagcagTGAGAAGGATGATCTGAAGGATGTAGCTGCGGCCAAGGTGAAGAAGATCACGGCGGAGCTTCAGGCAGCCTCGTCATCGGACAGCAAATCTTTTGATCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT