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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCAATCCTGCTTTGTATGGTGAGCTCGCCAAAGGTCAAAGCCCAAAGgtaaaacaaaaataagaagaaaaatatataaagcagttgatgaaaaatatagttatctctatatgaatatgttagatttttcttttggactcatattatatggtcatatactatgaattgtgcag

Basic information

species Arabidopsis thaliana
transcript AT5G14740.4
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125257260|gb|EL271345.1|EL271345
EST:     TTGTATGGTGAGCTCGCCAAAGGTCAAAGCCCAAAG                         TACATGGTGTTTGCTTGTTCGGACTCACGAGTGTGCCCATCACACGTACTA
genomic: TTGTATGGTGAGCTCGCCAAAGGTCAAAGCCCAAAGgtaaaacaaa ... aattgtgcagTACATGGTGTTTGCTTGTTCGGACTCACGAGTGTGCCCATCACACGTACTA
EST: gi|152035330|gb|BP850738.2|BP850738
EST:     GACCAATCCTGCTTTGTATGGTGAGCTCGGCAAAGGTCAAAGCCCAAAG                         TACATGGTGTT
genomic: GACCAATCCTGCTTTGTATGGTGAGCTCGCCAAAGGTCAAAGCCCAAAGgtaaaacaaa ... aattgtgcagTACATGGTGTT
EST: gi|124744941|gb|EH836103.1|EH836103
EST:     AGACCAATCCTGCTTTGTATGGTGAGCTCGCCAAAGGTCAAAGCCCAAAG                         TACATGGTGTTTGCTTGTTCGG
genomic: AGACCAATCCTGCTTTGTATGGTGAGCTCGCCAAAGGTCAAAGCCCAAAGgtaaaacaaa ... aattgtgcagTACATGGTGTTTGCTTGTTCGG
EST: gi|47828530|gb|CK118214.1|CK118214
EST:     GACCAATCCTGCTTTGTATGGTGAGCTCGCCAAAGGTCAAAGCCCAAAG                         TACATGGTGTTTGCTTGTTCGGACTCACGAGTGTGCCCATCACACGTACTA
genomic: GACCAATCCTGCTTTGTATGGTGAGCTCGCCAAAGGTCAAAGCCCAAAGgtaaaacaaa ... aattgtgcagTACATGGTGTTTGCTTGTTCGGACTCACGAGTGTGCCCATCACACGTACTA
EST: gi|124705878|gb|EH797280.1|EH797280
EST:     GACCAATCCTGCTTTGTATGGTGAGCTCGCCAAAGGTCAAAGCCCAAAG                         TACATGGTGTTTGCTTGTTCGGACTCACGAGTGTG
genomic: GACCAATCCTGCTTTGTATGGTGAGCTCGCCAAAGGTCAAAGCCCAAAGgtaaaacaaa ... aattgtgcagTACATGGTGTTTGCTTGTTCGGACTCACGAGTGTG
EST: gi|125061463|gb|EL130102.1|EL130102
EST:     TCCTGCTTTGTATGGTGAGCTCGCCAAAGGTCAAAGCCCAAAG                         TACATGGTGTTTGCTTGTTCGGACTCACGAGTGTGCCCATCACACGTACTA
genomic: TCCTGCTTTGTATGGTGAGCTCGCCAAAGGTCAAAGCCCAAAGgtaaaacaaa ... aattgtgcagTACATGGTGTTTGCTTGTTCGGACTCACGAGTGTGCCCATCACACGTACTA