1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagtttcttatatctatgtatatacatgatcgatatgtcatgtttgaacaaaatttagcactaatttgaagcatattttcatgaataatgacaataacaaacaatccgttttttttccagGGATTAACGATTGTAACTCATATTCTTAAAGAAGGTGGAAAATTTATTGCAAAGATATTCCGTGGAAAAGATACAAGTCTCTTGTACTGTCAA
species | Arabidopsis thaliana |
transcript | AT5G01230.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTCCAGTCCCAACTCATACTAGCA GGATTTAACGTATTGTAACTCATATTCTTAAAGAAGGTGGAAAATTTATTGEST: gi|164201021|gb|ES019084.1|ES019084
genomic: GTCCAGTCCCAACTCATACTAGCAgtaagtttct ... ttttttccagGGA-TTAACG-ATTGTAACTCATATTCTTAAAGAAGGTGGAAAATTTATTG
EST: CTGGTTTGCATGACATGGATGAATTTGTCCAGTCCCAACTCATACTAGCA GGATTAACGATTGTAACTCATATTCTTAA
genomic: CTGGTTTGCATGACATGGATGAATTTGTCCAGTCCCAACTCATACTAGCAgtaagtttct ... ttttttccagGGATTAACGATTGTAACTCATATTCTTAA
ttgaagcatattttcatgaataatgacaataacaaacaatccgttttttttccagGGATTAACGATTGTAACTCATATTCTTAAAGAAGGTGGAAAATTTATTGCAAAGATATTCCGTGGAAAAGATACAAGTCTCTTGTACTGTCAA
caataac putative branch site (score: 2)
tccgttttttttcc putative PPT
atattttcatgaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttcttatatctatgtatatacatgatcgatatgtcatgtttgaacaaaatttagcactaatttgaagcatattttcatgaataatgacaataacaaacaatccgttttttttccagGGATTAACGATTGTAACTCATATTCTTAAAGAAGGTGGAAAATTTATTGCAAAGATATTCCGTGGAAAAGATACAAGTCTCTTGTACTGTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG