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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttggcgggtcttcttcttgtatatcgatttaatctcgaaattttctaccttgcagatatttttgttgtgcacttaatgtgtttgatagaatgcctctgagacacactagtggcttaacttatctctgtcccttcagttttcgctgacttttagtgttcatcgcagTGAACCAACTCCGTATTCTACTTTAGAGGCCATGGGAAAAGCTTCTCGAGACAAAAGG

Basic information

species Arabidopsis thaliana
transcript AT5G01230.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86044361|gb|DR340116.1|DR340116
EST:     CTACTTTGGTGCTACTCTTCTTCACATACCTAGCTGCTGTATACTATACG                         TGAACCAACTCCGTATTCTACTTTAGAGGCCATGGGAAAAGCTTCTCGAGA
genomic: CTACTTTGGTGCTACTCTTCTTCACATACCTAGCTGCTGTATACTATACGgtaatttggc ... ttcatcgcagTGAACCAACTCCGTATTCTACTTTAGAGGCCATGGGAAAAGCTTCTCGAGA
EST: gi|86044363|gb|DR340118.1|DR340118
EST:     CTACTTTGGTGCTGCTCTTCTTCACATACCTAGCTGCTGTATACTATACG                         TGAACCAACTCCGTATTCTACTTTAGAGGCCATGGGAAAAGCTTCTCGAGA
genomic: CTACTTTGGTGCTACTCTTCTTCACATACCTAGCTGCTGTATACTATACGgtaatttggc ... ttcatcgcagTGAACCAACTCCGTATTCTACTTTAGAGGCCATGGGAAAAGCTTCTCGAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcttaacttatctctgtcccttcagttttcgctgacttttagtgttcatcgcagTGAACCAACTCCGTATTCTACTTTAGAGGCCATGGGAAAAGCTTCTCGAGACAAAAGG
                              cgctgac  putative branch site (score: 3)
     aacttat  TA-rich tract