1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagtttctcttccaccatcgtttttctttagttgttttaatctgctagttagtaatccactatttgacaaggttgaactgatttgttactgttgaaacactatgcagAGATGGGGATCTTCCTCTTATAGTAGCCATCGATTTGCAGCCTATGGCTCCAATTGAAGGTGTCATCCAGGTTCAAGGGGACATAACTAATGCTCGGACT
species | Arabidopsis thaliana |
transcript | AT5G01230.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTCTTGAGTCGTCAATTATATCTTCCTGCAAAGTCCTCAGCTGAGTCAAA AGATGGGGATCTTCCTCTTATAGTAGCCATCGATTTGCAGCCTATGGCTCCEST: gi|163971093|gb|ES011037.1|ES011037
genomic: GTCTTGAGTCGTCAATTATATCTTCCTGCAAAGTCCTCAGCTGAGTCAAAgtaagtttct ... cactatgcagAGATGGGGATCTTCCTCTTATAGTAGCCATCGATTTGCAGCCTATGGCTCC
EST: GTCTTGAGTCGTCAATTATATCTTCCTGCAAAGTCCTCAGCTGAGTCAAA AGATGGGGATCTTCCTCTTAEST: gi|86044363|gb|DR340118.1|DR340118
genomic: GTCTTGAGTCGTCAATTATATCTTCCTGCAAAGTCCTCAGCTGAGTCAAAgtaagtttct ... cactatgcagAGATGGGGATCTTCCTCTTA
EST: GTCTTGAGTCGTCAATTATATCTTCCTGCAAAGTCCTCAGCTGAGTCAAA AGATGGGGATCTTCCTCTTAT-GSTAGCCATCGATTTGCAGCCTATGGCTC
genomic: GTCTTGAGTCGTCAATTATATCTTCCTGCAAAGTCCTCAGCTGAGTCAAAgtaagtttct ... cactatgcagAGATGGGGATCTTCCTCTTATAG-TAGCCATCGATTTGCAGCCTATGGCTC
taatccactatttgacaaggttgaactgatttgttactgttgaaacactatgcagAGATGGGGATCTTCCTCTTATAGTAGCCATCGATTTGCAGCCTATGGCTCCAATTGAAGGTGTCATCCAGGTTCAAGGGGACATAACTAATGCTCGGACT
aactgat putative branch site (score: 3)
atttgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttctcttccaccatcgtttttctttagttgttttaatctgctagttagtaatccactatttgacaaggttgaactgatttgttactgttgaaacactatgcagAGATGGGGATCTTCCTCTTATAGTAGCCATCGATTTGCAGCCTATGGCTCCAATTGAAGGTGTCATCCAGGTTCAAGGGGACATAACTAATGCTCGGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG