1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTGTGAAGAGGGTCGTAGATTTATGTGCTGCACCTGGTAGCTGGAGTCAGgtatggtgatcctaggttgttactactcacattctgcacaatgtaaattggcttagtcacttagtagatctctcatagaagaaagaagaatccgtttaaa...
species | Arabidopsis thaliana |
transcript | AT5G01230.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTGTGAAGAGGGTCGTAGATTTGTGTGCTGCACCTGGTAGCTGGAGTCAG GTCTTGAGTCGTCAATTATATCTTCCTGCAAAGTCCTCAGCTGAGTCAAAEST: gi|86044363|gb|DR340118.1|DR340118
genomic: GTGTGAAGAGGGTCGTAGATTTATGTGCTGCACCTGGTAGCTGGAGTCAGgtatggtgat ... gcatttgtagGTCTTGAGTCGTCAATTATATCTTCCTGCAAAGTCCTCAGCTGAGTCAAA
EST: GTGTGAAGAGGGTCGTAGATTTATGTGCTGCACCTGGTAGCTGGAGTCAG GTCTTGAGTCGTCAATTATATCTTCCTGCAAAGTCCTCAGCTGAGTCAAAEST: gi|164080422|gb|ES077788.1|ES077788
genomic: GTGTGAAGAGGGTCGTAGATTTATGTGCTGCACCTGGTAGCTGGAGTCAGgtatggtgat ... gcatttgtagGTCTTGAGTCGTCAATTATATCTTCCTGCAAAGTCCTCAGCTGAGTCAAA
EST: TGTTGAAGAGGGTCGTAGATTTATGTGCTGCACCTGGTGGCTGGAGTCAG GTCTTGAGTCGTCAATTATATCTT
genomic: TG-TGAAGAGGGTCGTAGATTTATGTGCTGCACCTGGTAGCTGGAGTCAGgtatggtgat ... gcatttgtagGTCTTGAGTCGTCAATTATATCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTGAAGAGGGTCGTAGATTTATGTGCTGCACCTGGTAGCTGGAGTCAGgtatggtgatcctaggttgttactactcacattctgcacaatgtaaattggcttagtcacttagtagatctctcatagaagaaagaagaatccgtttaaa
- TGAAGA
- - AAGAGG
- - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - GCTGGA