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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATCAGTTGCAGTGTATGGAAGTTTGATTGTGATGCTGGTATTTTTACCAGTCAAACTTGCGATCCGGATGGCTCCTTCAATCTTTCCACTTGACATATCgtaagaaatattgactaacctcttgtttttggagattttgtgtttgattaggtctttcctaacttgggcatatatgcag

Basic information

species Arabidopsis thaliana
transcript AT4G34100.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G34100.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os06g43210.1 (Oryza sativa), 5'ss of exon 4
TATCAGTTGCAGTGTATGGAAGTTTGATTGTGATGCTGGTATTTTTACCAGTCAAACTTGCGATCCGGATGGCTCCTTCAATCTTTCCACTTGACATATCgtaagaaatattgactaacctct-tgtttttggagattttgtg----tttgatt--aggtcttt---cctaacttgg----gcatatatgcag
| || ||||| ||||||||||| ||||||||||| || || || ||||| |||||||| || || ||  | ||||| || || ||||| || |||||  ||| || |  ||         | | ||| |||    |||||||     ||| |||  || | |||   ||||  |||     |   || |||||
TGTCTGTTGCTGTGTATGGAAGCTTGATTGTGATACTTGTTTTCTTACCTGTCAAACTGGCCATGCGAGTAGCTCCATCGATTTTTCCTCTGGACATCACgtgagtatcatctctgtgtgtgtgtgtatttatttattttgttcctttttcattttagatttttaaacctacattgttgttgtggatttgcag

upper sequence: AT4G34100.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G145104_T01 (Zea mays), 5'ss of exon 4
TATCAGTTGCAGTGTATGGAAGTTTGATTGTGATGCTGGTATTTTTACCAGTCAAACTTGCGATCCGGATGGCTCCTTCAATCTTTCCACTTGACATATCgtaagaaatattgactaacctct----tg--tttttggagattttgtgtttga---ttaggtctttcctaacttgggcatatatgcag
| ||||||||||||||||||||||||||||||||| |||| || ||||| || ||||| || ||  |  | ||||||||||| ||||| || |||||  ||| ||  |  ||  | ||| | |    ||  ||||| |  |||| |  ||  |    || || ||   |  ||   |   |  |||||
TGTCAGTTGCAGTGTATGGAAGTTTGATTGTGATGTTGGTCTTCTTACCTGTAAAACTGGCCATGAGAGTAGCTCCTTCAATTTTTCCTCTGGACATCACgtgagttagcttatccaacatgtattctgatttttttgtcatttggaattacaatcctaagtgttgtttgcctcctgtggaattgcag

upper sequence: AT4G34100.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G051792_T01 (Zea mays), 5'ss of exon 4
TATCAGTTGCAGTGTATGGAAGTTTGATTGTGATGCTGGTATTTTTACCAGTCAAACTTGCGATCCGGATGGCTCCTTCAATCTTTCCACTTGACATATCgtaagaaatattgactaac-------ctcttgtttttggagattttgtgtttga----ttaggtctttcctaacttgggcatatatgcag
| ||||||||||||||||||||||||||||||||| | || || ||||| || ||| | || ||  |  | ||||||||||| ||||| || |||||| ||| ||  |  ||  | | |       ||  | ||||| |  |||| |  ||  |     || || |||     |||  |   |  |||||
TGTCAGTTGCAGTGTATGGAAGTTTGATTGTGATGTTAGTCTTCTTACCTGTAAAAGTGGCCATGAGAGTAGCTCCTTCAATGTTTCCTCTGGACATAACgtgagttagcttacccagcatatattctgctttttttagttatttggaattccaaatcctaagtgtttgtcc-cttctgtggaattgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116474921|gb|EG517513.1|EG517513
EST:     GTCAAACTTGCGATCCGGATGGCTCCTTCAATCTTTCCACTTGACATATC                         TGTATCCGACCCATTCACTGAGATTCCCGCCGACATGCTTCTGTTTCAAAT
genomic: GTCAAACTTGCGATCCGGATGGCTCCTTCAATCTTTCCACTTGACATATCgtaagaaata ... atatatgcagTGTATCCGACCCATTCACTGAGATTCCCGCCGACATGCTTCTGTTTCAAAT
EST: gi|163975255|gb|ES111737.1|ES111737
EST:     GTCAAACTTGCGATCCGGATGGCTCCTTCAATCTTTCCACTTGACATATC                         TGTATCCGACCC
genomic: GTCAAACTTGCGATCCGGATGGCTCCTTCAATCTTTCCACTTGACATATCgtaagaaata ... atatatgcagTGTATCCGACCC