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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGGGTTGGATGACGCTGATGGTGCAGAAGACGTTCCATTTGATGAGCTGGTTGGAATGCAAGGTCCAGTGTTTCATTTGGTTGAGAATGCCTTTACTgtaagttgatgtttctactttttggcaatgtatattttaaattctatgttccttcttcttcactattggcccttattaaatcttcatgatgtgcataattttgcag

Basic information

species Arabidopsis thaliana
transcript AT4G34100.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G34100.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os06g43210.1 (Oryza sativa), 5'ss of exon 2
TGATGGGTTGGATGACGCTGATGGTGCAGAAGACGTTCCATTTGATGAGCTGGTTGGAATGCAAGGTCCAGTGTTTCATTTGGTTGAGAATGCCTTTACTgtaagttgatgtttctactttttggcaatgtatattttaaattctatgttccttcttcttcactattggcccttattaaatcttcatgatgtgcataattttgcag
 ||||| |||||||| || ||||||||||| || ||||| |||||||| || || || |||||||| || || || || ||||||||||| ||  | || |||||  ||| || ||    |    ||    || || |   || | |  |      |   |   |||| |   |   | | |||| || |    ||          
AGATGGTTTGGATGATGCAGATGGTGCAGAGGATGTTCCTTTTGATGAACTTGTAGGCATGCAAGGCCCTGTTTTCCACTTGGTTGAGAACGCAATAACAgtaag--gattttgctttcctgccccacaacatgttcttgtttttttaatgaacagta--cgacattgccatgttgcagaacttcttgcttcttatgggccaat--

upper sequence: AT4G34100.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G145104_T01 (Zea mays), 5'ss of exon 2
TGATGGGTTGGATGACGCTGATGGTGCAGAAGACGTTCCATTTGATGAGCTGGTTGGAATGCAAGGTCCAGTGTTTCATTTGGTTGAGAATGCCTTTACTgtaagttgatgtttctactttttggcaatgtatattttaaattctatgttccttcttcttcactattggcccttattaaatcttcatgatgtgc-ataattttgcag
||||||  ||||||| |||||||| ||||| |||||||| |||||||| || ||||| |||||||| || || || || ||||||||||||||  | || || |||   | ||| | |  |    ||  |||| |||  |  || ||||     |  |||  |   |  |  || | |  ||   | | ||||     ||| | |  
TGATGGTCTGGATGATGCTGATGGAGCAGAGGACGTTCCTTTTGATGAACTTGTTGGTATGCAAGGCCCTGTCTTCCACTTGGTTGAGAATGCAATAACAgtgagt-actattttttccctacaaca-cgtatctttagatctccatgtgttggcaacttggca--taactattttgagttccata-gttgtgttgccattctac--

upper sequence: AT4G34100.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G051792_T01 (Zea mays), 5'ss of exon 2
TGATGGGTTGGATGACGCTGATGGTGCAGAAGACGTTCCATTTGATGAGCTGGTTGGAATGCAAGGTCCAGTGTTTCATTTGGTTGAGAATGCCTTTACTgtaagttgatgtttctactttttggcaatgtatattttaaattctatgttccttcttcttcactattggcccttattaaatcttcatgatgtgc-ataattttgcag
||||||  | ||||| || ||||||||||| |||||||| |||||||| || ||||| |||||||| || || || || ||||||||||| ||  | || || ||       |  |  ||||   ||||   | |||  |  |  ||||    ||  | | ||| ||     ||    |||  |  ||   ||| |  |     || 
TGATGGTCTAGATGATGCAGATGGTGCAGAGGACGTTCCTTTTGATGAACTTGTTGGTATGCAAGGCCCTGTCTTCCACTTGGTTGAGAACGCAATAACAgtgagc----actattttttttctacaatccttttttagatctacatgtg---tcggcataactgttttaattttgagaattgtgttgccatgctaccacaaaacat