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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaatattgactaacctcttgtttttggagattttgtgtttgattaggtctttcctaacttgggcatatatgcagTGTATCCGACCCATTCACTGAGATTCCCGCCGACATGCTTCTGTTTCAAATATGCATTCCATTTATCATCGAGCATTTCAGACTTCGGACCACAATTAAG

Basic information

species Arabidopsis thaliana
transcript AT4G34100.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116474921|gb|EG517513.1|EG517513
EST:     GTCAAACTTGCGATCCGGATGGCTCCTTCAATCTTTCCACTTGACATATC                         TGTATCCGACCCATTCACTGAGATTCCCGCCGACATGCTTCTGTTTCAAAT
genomic: GTCAAACTTGCGATCCGGATGGCTCCTTCAATCTTTCCACTTGACATATCgtaagaaata ... atatatgcagTGTATCCGACCCATTCACTGAGATTCCCGCCGACATGCTTCTGTTTCAAAT
EST: gi|163975255|gb|ES111737.1|ES111737
EST:     GTCAAACTTGCGATCCGGATGGCTCCTTCAATCTTTCCACTTGACATATC                         TGTATCCGACCC
genomic: GTCAAACTTGCGATCCGGATGGCTCCTTCAATCTTTCCACTTGACATATCgtaagaaata ... atatatgcagTGTATCCGACCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttttggagattttgtgtttgattaggtctttcctaacttgggcatatatgcagTGTATCCGACCCATTCACTGAGATTCCCGCCGACATGCTTCTGTTTCAAATATGCATTCCATTTATCATCGAGCATTTCAGACTTCGGACCACAATTAAG
                                tcctaac  putative branch site (score: 1)
                  tttgatta  TA-rich tract