1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGAGCATTGAGTGGTTACATAAGGATAAGGAGCAAGACGCAAGGGATTGCCCTAAGTCTTGGGGACAAAATCACCCTCAAACAAAAGGGTAGTAGCTGAGgttagctaatcttttcaaaacatattctatttctcgattaatacatgttttaatccttaaaccgcaattggtctaaatttcag
species | Arabidopsis thaliana |
transcript | AT4G31480.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CCTAAGTCTTGGGGACAAAATCACCCTCAAACAAAAGGGTAGTAGCTGAG TACCATACCGATGATTTCTCACAGTGGCGTGCAAAGGTAACAGGTTTAEST: gi|125045700|gb|EL117969.1|EL117969
genomic: CCTAAGTCTTGGGGACAAAATCACCCTCAAACAAAAGGGTAGTAGCTGAGgttagctaat ... taaatttcagTACCATACCGATGATTTCTCACAGTGGCGTGCAAAGGTAACAGGTTTA
EST: CTAAGTCTTGGGGACAAAAATCACCCTCAAACAAAAGGGTAGTAGCTGAG TACCATACCGAEST: gi|125314949|gb|EL329034.1|EL329034
genomic: CTAAGTCTTGGGGAC-AAAATCACCCTCAAACAAAAGGGTAGTAGCTGAGgttagctaat ... taaatttcagTACCATACCGA
EST: GGACAAAATCACCCTCAAACAAAAGGGTAGTAGCTGAG TACCATACCGATGATTTCTCACAGTGGCGTGCAAAGGTAACAGGTTTAGAC
genomic: GGACAAAATCACCCTCAAACAAAAGGGTAGTAGCTGAGgttagctaat ... taaatttcagTACCATACCGATGATTTCTCACAGTGGCGTGCAAAGGTAACAGGTTTAGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGCATTGAGTGGTTACATAAGGATAAGGAGCAAGACGCAAGGGATTGCCCTAAGTCTTGGGGACAAAATCACCCTCAAACAAAAGGGTAGTAGCTGAGgttagctaatcttttcaaaacatattctatttctcgattaatacatgttttaatccttaaaccgcaattggtctaaatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA