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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCTGTGAACACCACAATACAAAACGAAAGAGAATTCCTCGACCACATTATCAAATCTACAAACATGAAATGTCTCACTGCTCCgtaagtgtaaattcttctttcatcctgtagaaacgaaaaactcttcttactaattaatacttctttacttgcag

Basic information

species Arabidopsis thaliana
transcript AT4G31480.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G31480.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: PP1S309_15V6.2 (Physcomitrella patens), 5'ss of exon 4
GTTGCTGTGAACACCACAATACAAAACGAAAGAGAATTCCTCGACCACATTATCAAATCTACAAACATGAAATGTCTCACTGCTCCgtaagtgtaaattcttctttcatcct-gtagaaacgaaaaactcttcttactaattaatacttctttacttgcag--------------------------
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GTGGCGATTAACACTACCATACAAGTGGTGCGGGGTTTCTTGCAGCATATTGTTGATTCTACAAACATGAAGTGTCTCACTCCTCCgtaagt-tccattctttagtcatcaaagcattgatataaagcattgatatcgaagtaactcgtcactgcccttttctttttgtctatcctatgtggtattt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164110835|gb|ES068460.1|ES068460
EST:     -TCCTCGACCACATTATCAAATCTACAAACATGAAATGTCTCACTGCTCC                         ATCCGCAATAGAAGGCGAAT
genomic: TTCCTCGACCACATTATCAAATCTACAAACATGAAATGTCTCACTGCTCCgtaagtgtaa ... ttacttgcagATCCGCAATAGAAGGCGAAT
EST: gi|86058808|gb|DR354565.1|DR354565
EST:     TTCCTCGACCACATTATCAAATCTACAAACATGAAATGTCTCACTGCTCC                         ATCCGCAATAGAAGGCGAATGTGGATTCCTTGCAGCAAACTTATACGCAAA
genomic: TTCCTCGACCACATTATCAAATCTACAAACATGAAATGTCTCACTGCTCCgtaagtgtaa ... ttacttgcagATCCGCAATAGAAGGCGAATGTGGATTCCTTGCAGCAAACTTATACGCAAA
EST: gi|86086628|gb|DR382387.1|DR382387
EST:     TTCCTCGACCACATTATCAAATCTACAAACATGAAATGTCTCACTGCTCC                         ATCCGCAATAGAAGGCGAATGTGGATTCCTTGCAGCAAACTTATACGCAAA
genomic: TTCCTCGACCACATTATCAAATCTACAAACATGAAATGTCTCACTGCTCCgtaagtgtaa ... ttacttgcagATCCGCAATAGAAGGCGAATGTGGATTCCTTGCAGCAAACTTATACGCAAA
EST: gi|125039052|gb|EL111321.1|EL111321
EST:     CAAATCTACGAACATGAAATGTCTCACTGCTCC                         ATCCGCAATAGAAGGCGAATGTGGATT
genomic: CAAATCTACAAACATGAAATGTCTCACTGCTCCgtaagtgtaa ... ttacttgcagATCCGCAATAGAAGGCGAATGTGGATT
EST: gi|164118708|gb|ES014772.1|ES014772
EST:     TTCCTCGACCACATTATCAAATCTACAAACATGAAATGTCTCACTGCTCC                         ATCCGCAATAGAAGGCGAATGT
genomic: TTCCTCGACCACATTATCAAATCTACAAACATGAAATGTCTCACTGCTCCgtaagtgtaa ... ttacttgcagATCCGCAATAGAAGGCGAATGT
EST: gi|125198790|gb|EL213744.1|EL213744
EST:     TTCCTCGACCACATTATCAAATCTACAAACATGAAATGTCTCACTGCTCC                         ATCCGCAATAGAAGGCGGATGTGGA
genomic: TTCCTCGACCACATTATCAAATCTACAAACATGAAATGTCTCACTGCTCCgtaagtgtaa ... ttacttgcagATCCGCAATAGAAGGCGAATGTGGA