Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagctaatcttttcaaaacatattctatttctcgattaatacatgttttaatccttaaaccgcaattggtctaaatttcagTACCATACCGATGATTTCTCACAGTGGCGTGCAAAGGTAACAGGTTTAGACTACGTACGTTTCTCTTGAGCAATTATCGTTGGTTGAATCTGCTTATTAT

Basic information

species Arabidopsis thaliana
transcript AT4G31480.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86086628|gb|DR382387.1|DR382387
EST:     CCTAAGTCTTGGGGACAAAATCACCCTCAAACAAAAGGGTAGTAGCTGAG                         TACCATACCGATGATTTCTCACAGTGGCGTGCAAAGGTAACAGGTTTA
genomic: CCTAAGTCTTGGGGACAAAATCACCCTCAAACAAAAGGGTAGTAGCTGAGgttagctaat ... taaatttcagTACCATACCGATGATTTCTCACAGTGGCGTGCAAAGGTAACAGGTTTA
EST: gi|125045700|gb|EL117969.1|EL117969
EST:     CTAAGTCTTGGGGACAAAAATCACCCTCAAACAAAAGGGTAGTAGCTGAG                         TACCATACCGA
genomic: CTAAGTCTTGGGGAC-AAAATCACCCTCAAACAAAAGGGTAGTAGCTGAGgttagctaat ... taaatttcagTACCATACCGA
EST: gi|125314949|gb|EL329034.1|EL329034
EST:     GGACAAAATCACCCTCAAACAAAAGGGTAGTAGCTGAG                         TACCATACCGATGATTTCTCACAGTGGCGTGCAAAGGTAACAGGTTTAGAC
genomic: GGACAAAATCACCCTCAAACAAAAGGGTAGTAGCTGAGgttagctaat ... taaatttcagTACCATACCGATGATTTCTCACAGTGGCGTGCAAAGGTAACAGGTTTAGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttctcgattaatacatgttttaatccttaaaccgcaattggtctaaatttcagTACCATACCGATGATTTCTCACAGTGGCGTGCAAAGGTAACAGGTTTAGACTACGTACGTTTCTCTTGAGCAATTATCGTTGGTTGAATCTGCTTATTAT
                                          gtctaaa  putative branch site (score: 3)
        attaatacatgtttta  TA-rich tract