1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGAAAGGGAAGATGGGTTTCTTCTTCACAGAGTTAGCTTCTCAGAGTTTgtaagtcccctagtttctttcttgtgttaagatatgtttatcaagaccaagaaaaacataagaaaaaagggaaataacgtcttctttattttaccatatacag
species | Arabidopsis thaliana |
transcript | AT4G30993.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AGAAAGGGAAGATGGGTTTCTTCTTCACAAAGTTAGCTTCTCAGAGTTT GTTACTTATACTATCAACTCATCAGGAGAAGTCATTGACACAEST: gi|86080325|gb|DR376082.1|DR376082
genomic: AGAAAGGGAAGATGGGTTTCTTCTTCACAGAGTTAGCTTCTCAGAGTTTgtaagtcccc ... ccatatacagGTTACTTATACTATCAACTCATCAGGAGAAGTCATTGACACA
EST: AGAAAGGGAAGATGGGTTTCTTCTTCACAGAGTTAGCTTCTCAGAGTTT GTTACTTATACTATCAACTCATCAGGAGAAGTCATTGACACAAAATTAGTTEST: gi|124794203|gb|EH883882.1|EH883882
genomic: AGAAAGGGAAGATGGGTTTCTTCTTCACAGAGTTAGCTTCTCAGAGTTTgtaagtcccc ... ccatatacagGTTACTTATACTATCAACTCATCAGGAGAAGTCATTGACACAAAATTAGTT
EST: AGAAAGGGAAGATGGGTTTCTTCTTCACAGAGTTAGCTTCTCAGAGTTT GTTACTTATACTA
genomic: AGAAAGGGAAGATGGGTTTCTTCTTCACAGAGTTAGCTTCTCAGAGTTTgtaagtcccc ... ccatatacagGTTACTTATACTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAAGGGAAGATGGGTTTCTTCTTCACAGAGTTAGCTTCTCAGAGTTTgtaagtcccctagtttctttcttgtgttaagatatgtttatcaagaccaagaaaaacataagaaaaaagggaaataacgtcttctttattttaccatatacag
- - - GGAAGA
- - - - AAGATG