1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagacattgaatatcttgcattgccgagaaatttgatggaacgaatcaagtatatgattgatctgagaggaaaaactttgatgaatacaagAACTTATATATAAGCGAAAAAGGCTGCACAAGGGGAGGCAGCAACGAGAGCTTGACTTGCATTACGGTTCCTAATCAACAAGAGAACCAAGGTCCAACGA
species | Arabidopsis thaliana |
transcript | AT4G30993.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTAAGAGAGTGGCAAGGACATTTCATCAAATCATGACCAAATATGGAGTG AACTTATATATAAGEST: gi|86080325|gb|DR376082.1|DR376082
genomic: CTAAGAGAGTGGCAAGGACATTTCATCAAATCATGACCAAATATGGAGTGgtaagacatt ... tgaatacaagAACTTATATATAAG
EST: CTAAGAGAGTGGCAAGGACATTTCATCAAATCATGACCAAATATGGAGTG AACTTATATATAAGCGAAAAAGGCTGCACAAGGGGAGGCAGCAACGAGAGCEST: gi|124761462|gb|EH851592.1|EH851592
genomic: CTAAGAGAGTGGCAAGGACATTTCATCAAATCATGACCAAATATGGAGTGgtaagacatt ... tgaatacaagAACTTATATATAAGCGAAAAAGGCTGCACAAGGGGAGGCAGCAACGAGAGC
EST: TCATGACCAAATATGGAGTG AACTTATATATAAGCGAAAAAGGCTGCACAAGGGGAGGCAGCAACGAGAGC
genomic: TCATGACCAAATATGGAGTGgtaagacatt ... tgaatacaagAACTTATATATAAGCGAAAAAGGCTGCACAAGGGGAGGCAGCAACGAGAGC
tggaacgaatcaagtatatgattgatctgagaggaaaaactttgatgaatacaagAACTTATATATAAGCGAAAAAGGCTGCACAAGGGGAGGCAGCAACGAGAGCTTGACTTGCATTACGGTTCCTAATCAACAAGAGAACCAAGGTCCAACGA
tatatgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagacattgaatatcttgcattgccgagaaatttgatggaacgaatcaagtatatgattgatctgagaggaaaaactttgatgaatacaagAACTTATATATAAGCGAAAAAGGCTGCACAAGGGGAGGCAGCAACGAGAGCTTGACTTGCATTACGGTTCCTAATCAACAAGAGAACCAAGGTCCAACGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA