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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGTGCTTGGTGGAGCAGTGAATGCCTATATGATCAGTCAATTGAAAGGGTTGACAAGGATTCTAAAAGCAGTAGACGGAGACTGgtaagttggcttttttcagcgatagattgtcttgatctctcatcaacttgtataaaataccgtctctgtcgttatttggtgaccaagtttgctttctgctctccaaaatcagtccttataatctgtgccatgtgcttgatattacag

Basic information

species Arabidopsis thaliana
transcript AT4G30993.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86080325|gb|DR376082.1|DR376082
EST:     AGTCAATTGAAAGGGTTGACAAGGATTCTAAAAGCAGTAGACGGAGACTG                         GCGTATTGTGGTTGGATCAGACCCGTTACTCGCCTATACTCTAACTAAGGA
genomic: AGTCAATTGAAAGGGTTGACAAGGATTCTAAAAGCAGTAGACGGAGACTGgtaagttggc ... gatattacagGCGTATTGTGGTTGGATCAGACCCGTTACTCGCCTATACTCTAACTAAGGA
EST: gi|125302361|gb|EL316446.1|EL316446
EST:     TCTAAAAGCAGTAGACGGAGACTG                         GCGTATTGTGGTTGGATCAGACCCGTTACTCGCCTATACTCTAACTAAGGA
genomic: TCTAAAAGCAGTAGACGGAGACTGgtaagttggc ... gatattacagGCGTATTGTGGTTGGATCAGACCCGTTACTCGCCTATACTCTAACTAAGGA
EST: gi|124974959|gb|EL048486.1|EL048486
EST:     AATTGAAAGGGTTGACAAGGATTCTAAAAGCAGTAGACGGAGACTG                         GCGTATTGTGGTTGGATCAGACCCGTTACTCGCCTATACTCTAACTAAGGA
genomic: AATTGAAAGGGTTGACAAGGATTCTAAAAGCAGTAGACGGAGACTGgtaagttggc ... gatattacagGCGTATTGTGGTTGGATCAGACCCGTTACTCGCCTATACTCTAACTAAGGA