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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcttccattttgggttacttggattgacaaaaaagttctgaatctctttacttcagaaagttagcatgagtaatgagtgtattgatctttttgcagGCGACTCGACTGTCTTCTTCACTGAAACTTCCATG

Basic information

species Arabidopsis thaliana
transcript AT4G30993.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125251821|gb|EL265906.1|EL265906
EST:     TTGTTGTGAGCTCAAGTGAACAAGGAGAAGAAGATCCATTCCTGCAAAAT                         GCGACTCGACTGTCTTCTTCA
genomic: TTGTTGTGAGCTCAAGTGAACAAGGAGAAGAAGATCCATTCCTGCAAAATgtaatcttcc ... ctttttgcagGCGACTCGACTGTCTTCTTCA
EST: gi|124914634|gb|EH988508.1|EH988508
EST:     TTGTTGTGAGCTCAAGTGAACAAGGAGAAGAAGATCCATTCCTGCAAAAT                         GCGACTCGACTGTCTTCTTCACTGAAACTTCCATGGTACA
genomic: TTGTTGTGAGCTCAAGTGAACAAGGAGAAGAAGATCCATTCCTGCAAAATgtaatcttcc ... ctttttgcagGCGACTCGACTGTCTTCTTCACTGAAACTTCCATGGTACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctctttacttcagaaagttagcatgagtaatgagtgtattgatctttttgcagGCGACTCGACTGTCTTCTTCACTGAAACTTCCATG
                                      tattgat  putative branch site (score: 3)
                                            tctttttgc  CT-rich tract
                                           atcttttt  TA-rich tract