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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGTGTTTTCGAGTTGATGGAAGCCATTGTTGACCAACCGCCACCCGCTCTTCCTTCAGGAAATTTCTCCCCTGAGTTATCTTCATTCATCTCCACATGgtaatctctcaaaaaattcctgctccctcttttactgagattactttactaagttaacatattccactctacactctcatccag

Basic information

species Arabidopsis thaliana
transcript AT4G29810.2
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124911785|gb|EH985865.1|EH985865
EST:     TTCATCTCCACATG                         TTTGCAGAAGGATCCAAACAGTCGAAGCTCTGCAAAGGAACTGATG
genomic: TTCATCTCCACATGgtaatctctc ... tctcatccagTTTGCAGAAGGATCCAAACAGTCGAAGCTCTGCAAAGGAACTGATG
EST: gi|116419429|gb|EG462021.1|EG462021
EST:     CTTCCTTCAGGAAATTTCTCCCCTGAGTTATCTTCATTCATCTCCACATG                         TTTGCAGAAGGATCCAAACAGTCGAAGCTCTGCAAAGGAACTGATG
genomic: CTTCCTTCAGGAAATTTCTCCCCTGAGTTATCTTCATTCATCTCCACATGgtaatctctc ... tctcatccagTTTGCAGAAGGATCCAAACAGTCGAAGCTCTGCAAAGGAACTGATG