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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactcattggttaaccttcagattcttttatgtatatgatgagctaaattcctcatcttttctctgtgtttgaagatttacaaatctttttcttccttgccttgtcactcactgtgcataactctgatgctatatgattagGTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTGCACAAGAGCTCAAAATAAATCAATCGTCACAGTGTCCAAATCTTGTTACCTCGTACC

Basic information

species Arabidopsis thaliana
transcript AT4G29810.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124765567|gb|EH855697.1|EH855697
EST:     CTGGTTCAACACAAATGGACTGGCCGATTTTTCGCCTTGAAG                         GTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTGCACAAGAG
genomic: CTGGTTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAGgtactcattg ... atatgattagGTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTGCACAAGAG
EST: gi|125084018|gb|EL144386.1|EL144386
EST:     TTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAG                         GTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTGCAACAAGA
genomic: TTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAGgtactcattg ... atatgattagGTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTGCA-CAAGA
EST: gi|116419430|gb|EG462022.1|EG462022
EST:     TTGTTCAGCTGGTTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAG                         GTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTGCACAAGAG
genomic: TTGTTCAGCTGGTTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAGgtactcattg ... atatgattagGTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTGCACAAGAG
EST: gi|124972869|gb|EL046536.1|EL046536
EST:     TTGTTCAGCTGGTTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAG                         GTCATTCAACTAAATATCGATGAAGCAATTCGCAAGGCAATTG
genomic: TTGTTCAGCTGGTTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAGgtactcattg ... atatgattagGTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttcttccttgccttgtcactcactgtgcataactctgatgctatatgattagGTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTGCACAAGAGCTCAAAATAAATCAATCGTCACAGTGTCCAAATCTTGTTACCTCGTACC
                                            tatatgatta  TA-rich tract