1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTTGTCGGATTTGGATATGGTTAAAGTCATTGGCAAAGGAAGTAGTGGTGTTGTTCAGCTGGTTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAGgtactcattggttaaccttcagattcttttatgtatatgatgagctaaattcctcatcttttctctgtgtttgaagatttacaaatctttttcttccttgccttgtcactcactgtgcataactctgatgctatatgattag
species | Arabidopsis thaliana |
transcript | AT4G29810.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTGGTTCAACACAAATGGACTGGCCGATTTTTCGCCTTGAAG GTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTGCACAAGAGEST: gi|125084018|gb|EL144386.1|EL144386
genomic: CTGGTTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAGgtactcattg ... atatgattagGTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTGCACAAGAG
EST: TTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAG GTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTGCAACAAGAEST: gi|116419430|gb|EG462022.1|EG462022
genomic: TTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAGgtactcattg ... atatgattagGTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTGCA-CAAGA
EST: TTGTTCAGCTGGTTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAG GTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTGCACAAGAGEST: gi|124972869|gb|EL046536.1|EL046536
genomic: TTGTTCAGCTGGTTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAGgtactcattg ... atatgattagGTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTGCACAAGAG
EST: TTGTTCAGCTGGTTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAG GTCATTCAACTAAATATCGATGAAGCAATTCGCAAGGCAATTG
genomic: TTGTTCAGCTGGTTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAGgtactcattg ... atatgattagGTCATTCAACTAAATATTGATGAAGCAATTCGCAAGGCAATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGTCGGATTTGGATATGGTTAAAGTCATTGGCAAAGGAAGTAGTGGTGTTGTTCAGCTGGTTCAACACAAATGGACTGGCCAATTTTTCGCCTTGAAGgtactcattggttaaccttcagattcttttatgtatatgatgagctaaattcctcatcttttctctgtgtttgaagatttacaaatctttttcttccttgccttgtcactcactgtgcataactctgatgctatatgattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG