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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatcttatttgtctcttgagcattgactagtttgaaacccctttcgagtgttataaaaattgagaatcttaatttttcctttttacagCCAGAGAGAATCGTTGGAAACAAGTACGGAAATAAAAGTGATATATGGAGCTTGGGTTTAGTAGTACTCGAATGTGCAACAGGAAAGTTCCCTTATGCAC

Basic information

species Arabidopsis thaliana
transcript AT4G29810.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125204613|gb|EL219567.1|EL219567
EST:     ACATTTGTGGGGACTTACAATTATATGTCT                         CCAGAGAGAATCGTTGGAAACAAGTACGGAAATAAAAGTGATATATGGAGC
genomic: ACATTTGTGGGGACTTACAATTATATGTCTgtaagtatct ... ctttttacagCCAGAGAGAATCGTTGGAAACAAGTACGGAAATAAAAGTGATATATGGAGC
EST: gi|125042984|gb|EL115253.1|EL115253
EST:     ACATTTGTGGGGACTTACAATTATATGTCT                         CCAGAGAGAATCGTTGGAAACAAGTACGGAAATAAAAAGTGATATATGGAG
genomic: ACATTTGTGGGGACTTACAATTATATGTCTgtaagtatct ... ctttttacagCCAGAGAGAATCGTTGGAAACAAGTACGGAAATAAAA-GTGATATATGGAG
EST: gi|125211094|gb|EL226048.1|EL226048
EST:     AACACATTTGTGGGGACTTACAATTATATGTCT                         CCAGAGAGAATCGTTGGAA
genomic: AACACATTTGTGGGGACTTACAATTATATGTCTgtaagtatct ... ctttttacagCCAGAGAGAATCGTTGGAA
EST: gi|125022177|gb|EL094446.1|EL094446
EST:     AGGTTTAGCAAACACATTTGTGGGGACTTACAATTATATGTCT                         CCAGAGAGAATCGTTGGAAACAAGTACGGAAATAAAAGTGATATATGGAGC
genomic: AGGTTTAGCAAACACATTTGTGGGGACTTACAATTATATGTCTgtaagtatct ... ctttttacagCCAGAGAGAATCGTTGGAAACAAGTACGGAAATAAAAGTGATATATGGAGC
EST: gi|116419430|gb|EG462022.1|EG462022
EST:     ACACCGCAGGTTTAGCAAACACATTTGTGGGGACTTACAATTATATGTCT                         CCAGAGAGAATCGTTGGAAACAAGTACGGAAATAAAAGTGATATATGGAGC
genomic: ACACCGCAGGTTTAGCAAACACATTTGTGGGGACTTACAATTATATGTCTgtaagtatct ... ctttttacagCCAGAGAGAATCGTTGGAAACAAGTACGGAAATAAAAGTGATATATGGAGC
EST: gi|125185019|gb|EL199973.1|EL199973
EST:     GGGGACTTACAATTATATGTCT                         CCAGAGAGAATCGTTGGAAACAAGTACGGAAATAAAAGTGATATATGGAGC
genomic: GGGGACTTACAATTATATGTCTgtaagtatct ... ctttttacagCCAGAGAGAATCGTTGGAAACAAGTACGGAAATAAAAGTGATATATGGAGC
EST: gi|125228885|gb|EL242970.1|EL242970
EST:     ACACCGCAGGTTTAGCAAACACATTTGTGGGGACTTACAATTATATGTCT                         CCAGAGAGAATCGTTGGAAACAAGTACGGAAATAAAAGTGATATA
genomic: ACACCGCAGGTTTAGCAAACACATTTGTGGGGACTTACAATTATATGTCTgtaagtatct ... ctttttacagCCAGAGAGAATCGTTGGAAACAAGTACGGAAATAAAAGTGATATA
EST: gi|124778428|gb|EH868371.1|EH868371
EST:     ATTATATGTCT                         CCAGAGAGAATCGTTGGAAACAAGTACGGAAATAAAAGTGATATATGGAGC
genomic: ATTATATGTCTgtaagtatct ... ctttttacagCCAGAGAGAATCGTTGGAAACAAGTACGGAAATAAAAGTGATATATGGAGC
EST: gi|116419429|gb|EG462021.1|EG462021
EST:     AAACACATTTGTGGGGACTTACAATTATATGTCT                         CCAGAGAGAATCGTTGGAAACAAGTACGGAAATAAAAGTGATATATGGAGC
genomic: AAACACATTTGTGGGGACTTACAATTATATGTCTgtaagtatct ... ctttttacagCCAGAGAGAATCGTTGGAAACAAGTACGGAAATAAAAGTGATATATGGAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaacccctttcgagtgttataaaaattgagaatcttaatttttcctttttacagCCAGAGAGAATCGTTGGAAACAAGTACGGAAATAAAAGTGATATATGGAGCTTGGGTTTAGTAGTACTCGAATGTGCAACAGGAAAGTTCCCTTATGCAC
                                 tcttaat  putative branch site (score: 3)
                                 tcttaatttttccttt  CT-rich tract
                 ttataaaaattgagaa  TA-rich tract