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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGATCTTCTTGGCATCATAGCTGGACATCTATACTACTTCCTAACAGTCCTTCATCCTCTTGCTACCGGAAAAAACTACCTGAAAACCCCAAAATGGGTgtatcctttattcaaattctcgattatttccagatgattgtttctctcgcttctcagtttttgttttgctgttgtaccttgacattctcaacag

Basic information

species Arabidopsis thaliana
transcript AT4G29330.1
intron # 6
splice site 5'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G29330.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G143817_T01 (Zea mays), 5'ss of exon 6
CAGATCTTCTTGGCATCATAGCTGGACATCTATACTACTTCCTAACAGTCCTTCATCCTCTTGCTACCGGAAAAAACTACCTGAAAACCCCAAAATGGGTgtatcctttattcaaattctcgattatttccagatgattgtttctc---tcgcttctcagtttttgttttgctgttgtaccttgacattctcaacag----------------------------------------------
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CAGGCCTTCTGGGTATCATGGTTGGACATCTATACTACTACTTTGCAGTGTTGCACCCTCTCGCCACCGGAAAGAACTACCTCAAGACTCCGAAATGGGTgtatccttt-------tacatggtcatggccaaagcattatctctcagtttgcatatacaactgagatcaatttctgcgctatggctactttattttttaatatatctgctccttgtctccttaacctgctgcacttgcacag