1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtattgaaagtgtttcttttgtaatcaaatccactccttggtatatataatgttaatggtgaaagttggaattactccacagGCTTTCTACCTCCCATGGGCAATGCTAGCACTTGATGTTATCTTCGGTTCTCCGATCATGCCAGATCTTCTTGGCATCATAGCTGGACATCTATACTACT
species | Arabidopsis thaliana |
transcript | AT4G29330.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAGAATTTCCAAATGCCAACATCAGCCTATACGGTCTTGTCACTCTTAAG GCTTTCTACCTCCCATGGGCAATGCTAGCACTTGATGTTATCTTCGGTTCTEST: gi|86072452|gb|DR368209.1|DR368209
genomic: GAGAATTTCCAAATGCCAACATCAGCCTATACGGTCTTGTCACTCTTAAGgtattgaaag ... tactccacagGCTTTCTACCTCCCATGGGCAATGCTAGCACTTGATGTTATCTTCGGTTCT
EST: GAGAATTTCCAAATGCCAACATCAGCCTATACGGTCTTGTCACTCTTAAG GCTTTCTACCTCCCATGGGCAATGCTAGCACTTGATGGTATCTTCGGNTCTEST: gi|86072450|gb|DR368207.1|DR368207
genomic: GAGAATTTCCAAATGCCAACATCAGCCTATACGGTCTTGTCACTCTTAAGgtattgaaag ... tactccacagGCTTTCTACCTCCCATGGGCAATGCTAGCACTTGATGTTATCTTCGGTTCT
EST: GAGAATTTCCAAATGCCAACATCAGCCTATACGGTCTTGTCACTCTTAAG GCTTTCTACCTCCCATGGGCAATGCTAGCACTTGATGGTTATCTTCGGTTC
genomic: GAGAATTTCCAAATGCCAACATCAGCCTATACGGTCTTGTCACTCTTAAGgtattgaaag ... tactccacagGCTTTCTACCTCCCATGGGCAATGCTAGCACTTGATG-TTATCTTCGGTTC
aatccactccttggtatatataatgttaatggtgaaagttggaattactccacagGCTTTCTACCTCCCATGGGCAATGCTAGCACTTGATGTTATCTTCGGTTCTCCGATCATGCCAGATCTTCTTGGCATCATAGCTGGACATCTATACTACT
tgttaat putative branch site (score: 3)
ttactcc putative PPT
tatatataatgttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgaaagtgtttcttttgtaatcaaatccactccttggtatatataatgttaatggtgaaagttggaattactccacagGCTTTCTACCTCCCATGGGCAATGCTAGCACTTGATGTTATCTTCGGTTCTCCGATCATGCCAGATCTTCTTGGCATCATAGCTGGACATCTATACTACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA