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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCGTTTCTTGGTGTTTCACTTGTGTTCATGCTTCTTTATCTCTGGAGCCGAGAATTTCCAAATGCCAACATCAGCCTATACGGTCTTGTCACTCTTAAGgtattgaaagtgtttcttttgtaatcaaatccactccttggtatatataatgttaatggtgaaagttggaattactccacag

Basic information

species Arabidopsis thaliana
transcript AT4G29330.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G29330.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA08G03630.1 (Glycine max), 5'ss of exon 5
ACCGTTTCTTGGTGTTTCACTTGTGTTCATGCTTCTTTATCTCTGGAGCCGAGAATTTCCAAATGCCAACATCAGCCTATACGGTCTTGTCACTCTTAAGgtattgaaagtgtttcttttgtaatcaaatccactccttg-gtatatataatgttaatggtgaaagttgga------attactccacag---------------------------
 || ||| | |  ||  ||||||| || ||||| |||||| | |||||  ||||||||||||||||| | |||| | ||||||| |||||  | ||||||||||      |   |||| |||||   | ||   | |||  | || | | |    |    |   || |  |      |||     | ||                           
CCCATTTTTGGCAGTACCACTTGTTTTTATGCTCCTTTATGTTTGGAGTAGAGAATTTCCAAATGCCCAAATCAACATATACGGGCTTGTTGCACTTAAGgtat---gtttcaatcttctgtaagttagtcttgttcttatgcatctgttacaggagctctatgaggtatatctttcattgtctgataggacccttttcttattttttttccccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86072451|gb|DR368208.1|DR368208
EST:     GAGAATTTCCAAATGCCAACATCAGCCTATACGGTCTTGTCACTCTTAAG                         GCTTTCTACCTCCCATGGGCAATGCTAGCACTTGATGTTATCTTCGGTTCT
genomic: GAGAATTTCCAAATGCCAACATCAGCCTATACGGTCTTGTCACTCTTAAGgtattgaaag ... tactccacagGCTTTCTACCTCCCATGGGCAATGCTAGCACTTGATGTTATCTTCGGTTCT
EST: gi|86072452|gb|DR368209.1|DR368209
EST:     GAGAATTTCCAAATGCCAACATCAGCCTATACGGTCTTGTCACTCTTAAG                         GCTTTCTACCTCCCATGGGCAATGCTAGCACTTGATGGTATCTTCGGNTCT
genomic: GAGAATTTCCAAATGCCAACATCAGCCTATACGGTCTTGTCACTCTTAAGgtattgaaag ... tactccacagGCTTTCTACCTCCCATGGGCAATGCTAGCACTTGATGTTATCTTCGGTTCT
EST: gi|86072450|gb|DR368207.1|DR368207
EST:     GAGAATTTCCAAATGCCAACATCAGCCTATACGGTCTTGTCACTCTTAAG                         GCTTTCTACCTCCCATGGGCAATGCTAGCACTTGATGGTTATCTTCGGTTC
genomic: GAGAATTTCCAAATGCCAACATCAGCCTATACGGTCTTGTCACTCTTAAGgtattgaaag ... tactccacagGCTTTCTACCTCCCATGGGCAATGCTAGCACTTGATG-TTATCTTCGGTTC