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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTACGTTGTGCTTTTTCACTACAGTAGCCACGCAGCTTGGCTTAGTTGCTCCCGTTCACATTGCTTTAATTCCTGAACTTGTACTTAAGCAGTTCCAGgtatatgatttattcttttttatgattttcctttctttctcacaaatctctgtcatcctaagttcctaattcattctgcaatttttgatctatttggtgtttgtag

Basic information

species Arabidopsis thaliana
transcript AT4G29330.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86072451|gb|DR368208.1|DR368208
EST:     CTCCCGTTCACATTGCTTTAATTCCTGAACTTGTACTTAAGCAGTTCCAG                         ATCTGGAGGCTGATAACAAACTTGTTTTTCCTCGGTGGTTTCTCTATCAAT
genomic: CTCCCGTTCACATTGCTTTAATTCCTGAACTTGTACTTAAGCAGTTCCAGgtatatgatt ... gtgtttgtagATCTGGAGGCTGATAACAAACTTGTTTTTCCTCGGTGGTTTCTCTATCAAT
EST: gi|86072452|gb|DR368209.1|DR368209
EST:     CTCCCGTTCACATTGCTTTAATTCCTGAACTTGTACTTAAGCAGTTCCAG                         ATCTGGAGGCTGATAACAAACTTGTTTTTCCTCGGTGGTTTCTCTATCAAT
genomic: CTCCCGTTCACATTGCTTTAATTCCTGAACTTGTACTTAAGCAGTTCCAGgtatatgatt ... gtgtttgtagATCTGGAGGCTGATAACAAACTTGTTTTTCCTCGGTGGTTTCTCTATCAAT
EST: gi|86072450|gb|DR368207.1|DR368207
EST:     CTCCCGTTCACATTGCTTTAATTCCTGAACTTGTACTTAAGCAGTTCCAG                         ATCTGGAGGCTGATAACAAACTTGTTTTTCCTCGGTGGTTTCTCTATCAAT
genomic: CTCCCGTTCACATTGCTTTAATTCCTGAACTTGTACTTAAGCAGTTCCAGgtatatgatt ... gtgtttgtagATCTGGAGGCTGATAACAAACTTGTTTTTCCTCGGTGGTTTCTCTATCAAT